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Table 4 Comparison of mC calling between our pipeline and Bismark

From: Single-base resolution maps of cultivated and wild rice methylomes and regulatory roles of DNA methylation in plant gene expression

  Called by both Called only by Bismark Called only by our method
CG 414,168 31,180 43,897
CHG 217,820 20,356 31,183
CHH 282,825 16,525 33,705