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Table 4 Comparison of mC calling between our pipeline and Bismark

From: Single-base resolution maps of cultivated and wild rice methylomes and regulatory roles of DNA methylation in plant gene expression

 

Called by both

Called only by Bismark

Called only by our method

CG

414,168

31,180

43,897

CHG

217,820

20,356

31,183

CHH

282,825

16,525

33,705