Table 3 Phylogenetically polarized lineage-specific substitutions for a) Gossypium barbadense , and b) Gossypium hirsutum allotetraploid genomes relative to their A- and D-genome diploid counterparts
Lineage | Number of Contigs | Total Nucleotides | Lineage-Specific Substitutions |
|---|---|---|---|
a) Gossypium barbadense lineage-specific SNPs relative to A- and D-genome diploids | |||
A2 | 4,863 | 3,755,712 | 3,211 |
AT | 4,863 | 3,755,712 | 5,556 |
D5 | 5,750 | 3,735,542 | 4,754 |
DT | 5,750 | 3,735,542 | 8,653 |
b) Gossypium hirsutum lineage-specific SNPs relative to A- and D-genome diploids | |||
Lineage | Number of Contigs | Total Nucleotides | Lineage-Specific Substitutions |
A2 | 5,051 | 3,839,389 | 3,977 |
AT | 5,051 | 3,839,389 | 6,412 |
D5 | 6,041 | 4,079,248 | 6,138 |
DT | 6,041 | 4,079,248 | 10,393 |