Oomycete transcriptomics database: A resource for oomycete transcriptomes

BMC Genomics

Table 1 RNAseq read alignment statistics

NGS library		P. sojae mycelia (4 replicates)				P. sojae-infected soybean (4 replicates)
P. sojae		PS1	PS2	PS3	PS4	WI1	WI2	WI3	WI4
assembly	v1.0	8491356	8569508	14643646	4748944	8645377	10382780	7331138	7272520
		(54.2%)*	51.4%	(50.8%)	(37.6%)	(13.7%)	(17.5%)	(11.1%)	(13.1%)
	v5.0	8909517	8924547	15248004	5141252	6862159	8978294	7067909	6713689
		(56.9%)	(53.5%)	(52.9%)	(40.7%)	(10.8%)	(15.1%)	(10.7%)	(12.1%)
NGS library		H. arabidopsidis-infected Arabidopsis (5 replicates)
H. arabidopsidis		sample 1	sample 2	sample 3	sample 4	sample 5
assembly	v8.3	247198	72427	82827	295351	517242
		(21.4%)	(16.8%)	(16.4%)	(28.7%)	(26.6%)

*Numbers and percentages of RNAseq reads aligned with the assembled reference genome.

ISSN: 1471-2164