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Table 2 Number of isogroups and singletons annotated by different approaches, confirmed expressed, and containing SNPs

From: De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco hyemalis): genomic tools for an ecological model system

Assignment

Isogroup

Singleton

Total Assembly

22,765

166,177

NCBI nr-protein

10,276

15,871

Ensembl - ZF

9,863

14,019

Gene Ontology

9,120

737

KEGG

3,827

3,984

OrthoDB

10,062

14,019

Expressed

16,781

16,096

SNP present

6,992

NA

  1. Sequences were annotated by sequence similarity to multiple databases, yielding the above number of annotations.