Table 1 Transcriptome statistics
From: Development and validation of genic-SSR markers in sesame by RNA-seq
Contig length | Number | Percentage (%) | Uni-scaffold length | Number | Percentage (%) |
|---|---|---|---|---|---|
100 ~ 200 bp | 205,735 | 60.02 | 100 ~ 200 bp | 4,613 | 10.84 |
201 ~ 300 bp | 70,767 | 20.65 | 201 ~ 300 bp | 5,727 | 13.45 |
301 ~ 400 bp | 26,685 | 7.79 | 301 ~ 400 bp | 3,786 | 8.89 |
401 ~ 500 bp | 14,143 | 4.13 | 401 ~ 500 bp | 2,709 | 6.36 |
501 ~ 600 bp | 8,174 | 2.38 | 501 ~ 600 bp | 2,053 | 4.82 |
601 ~ 700 bp | 5,052 | 1.47 | 601 ~ 700 bp | 1,756 | 4.13 |
701 ~ 800 bp | 3,336 | 0.97 | 701 ~ 800 bp | 1,534 | 3.60 |
801 ~ 900 bp | 2,332 | 0.68 | 801 ~ 900 bp | 1,415 | 3.32 |
901 ~ 1000 bp | 1,514 | 0.44 | 901 ~ 1000 bp | 1,343 | 3.16 |
1001 ~ 2000 bp | 4,567 | 1.33 | 1001 ~ 2000 bp | 10,256 | 24.09 |
2001 ~ 3000 bp | 422 | 0.12 | 2001 ~ 3000 bp | 4,616 | 10.84 |
3001 ~ 10 kbp | 49 | 0.01 | 3001 ~ 10 kbp | 2,734 | 6.42 |
>10 kbp | 0 | 0.00 | >10 kbp | 24 | 0.06 |
Total Contigs | 342,776 | 100.00 | Total Uni-scaffolds | 42,566 | 100.00 |
Total Length (bp) | 82,262,551 | Â | Total Length (bp) | 47,986,977 | Â |
N50 Length (bp) | 263 | Â | N50 Length (bp) | 1,901 | Â |
Mean Length (bp) | 239 | Â | Mean Length (bp) | 1,127 | Â |