Table 4 Frequency of different repeat motifs in perfect SSRs (≥15 bp and ≥18 bp)
From: Development and validation of genic-SSR markers in sesame by RNA-seq
Number of Motif copies | Mono- | Di- | Tri- | Tetra- | Penta- | Hexa- | Total | Frequency (%) |
|---|---|---|---|---|---|---|---|---|
2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.00 (0.00) |
3 | 0 | 0 | 0 | 0 | 543 | 742 | 1,285 (742) | 19.81 (20.20) |
4 | 0 | 0 | 0 | 257 | 93 | 150 | 500 (243) | 7.71 (6.61) |
5 | 0 | 0 | 1,075 | 59 | 10 | 32 | 1,176 (101) | 18.13 (2.75) |
6 | 0 | 0 | 452 | 14 | 1 | 4 | 471 | 7.26 (12.82) |
7 | 0 | 0 | 169 | 3 | 1 | 3 | 176 | 2.71 (4.79) |
8 | 0 | 828 | 81 | 2 | 2 | 1 | 914 (86) | 14.09 (2.34) |
9 | 0 | 549 | 45 | 0 | 0 | 0 | 594 | 9.16 (16.17) |
10 | 0 | 358 | 13 | 0 | 1 | 0 | 372 | 5.74 (10.13) |
11 | 0 | 254 | 4 | 0 | 1 | 0 | 259 | 3.99 (7.05) |
12 | 0 | 178 | 2 | 0 | 0 | 0 | 180 | 2.78 (4.90) |
13 | 0 | 103 | 1 | 0 | 0 | 0 | 104 | 1.60 (2.83) |
14 | 0 | 70 | 0 | 0 | 0 | 0 | 70 | 1.08 (1.91) |
15 | 51 | 50 | 0 | 0 | 0 | 0 | 101 (50) | 1.56 (1.36) |
16 | 40 | 52 | 1 | 0 | 0 | 0 | 93 (53) | 1.43 (1.44) |
17 | 17 | 28 | 2 | 0 | 0 | 0 | 47 (30) | 0.72 (0.82) |
18 | 11 | 19 | 0 | 0 | 0 | 0 | 30 | 0.46 (0.82) |
19 | 4 | 7 | 0 | 0 | 0 | 0 | 11 | 0.17 (0.30) |
20 | 2 | 16 | 0 | 0 | 0 | 0 | 18 | 0.28 (0.49) |
21 | 0 | 10 | 0 | 0 | 0 | 0 | 10 | 0.15 (0.27) |
22 | 1 | 19 | 0 | 0 | 0 | 0 | 20 | 0.31 (0.54) |
23 | 0 | 23 | 0 | 0 | 0 | 0 | 23 | 0.35 (0.63) |
24 | 2 | 21 | 0 | 0 | 0 | 0 | 23 | 0.35 (0.63) |
25 | 1 | 5 | 0 | 0 | 0 | 0 | 6 | 0.09 (0.16) |
26 | 0 | 2 | 0 | 0 | 0 | 0 | 2 | 0.03 (0.05) |
Total | 129 | 2,592 | 1,845 | 335 | 652 | 932 | 6,485 | 100.00 |
(21) | (1,764) | (770) | (78) | (109) | (932) | (3,674) | ||
Frequency (%) | 1.99 | 39.97 | 28.45 | 5.17 | 10.05 | 14.37 | 100.00 | Â |
| Â | (0.57) | (48.01) | (20.96) | (2.12) | (2.97) | (25.37) | Â | Â |