Skip to main content

Advertisement

Table 1 List of isolates sequenced for comparison.

From: High resolution clustering of Salmonella enterica serovar Montevideo strains using a next-generation sequencing approach

FDA Name Tree Label Locus Tag GenBank SRA NCBI BioProject Biosample Full Name
142 142_Pistachio_3 SEEM315 AESH00000000 SRX101634, SRX118696, SRX119982 46535 710595 Salmonella enterica subsp. enterica serovar Montevideo str. 315996572
144 144_Black_Pepper_6 SEEM971 AESI00000000 SRX101636, SRX119983, SRX118697 46539 710606 Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1
145 145_Black_Pepper_5 SEEM973 AESJ00000000 SRX101642 46541 710617 Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3
146 146_Black_Pepper_7 SEEM974 AESK00000000 SRX101643 46543 710624 Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4
147 147_Black_Pepper_3 SEEM201 AESL00000000 SRX101644 46545 710625 Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1
148 148_Black_Pepper_4 SEEM202 AESM00000000 SRX101645, SRX118768 46547 710626 Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2
155 155_ Clinical_NC_4 SEEM054 AESO00000000 SRX101647, SRX118769 46903 710628 Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054
156 156_Clinical_OH_3 SEEM675 AESP00000000 SRX101648, SRX119984, SRX118770 46905 710629 Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675
157 157_Clinical_CA SEEM965 AESQ00000000 SRX101649, SRX119443, SRX118771 46907 710596 Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965
158 158_Clinical_MD SEEM507 AETA00000000 SRX101650 49405 710597 Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507
160 160_Clinical_FL* SEEM031 AESR00000000 SRX105725 46911 754243 Salmonella enterica subsp. enterica serovar Montevideo str. SARB31
161 161_Clinical_1993* SEEM710 AESS00000000 SRX105759 46913 754295 Salmonella enterica subsp. enterica serovar Montevideo str. ATCC BAA710
162 162_Reference* SEEM010 AEST00000000 SRX105760 46915 754296 Salmonella enterica subsp. enterica serovar Montevideo str. LQC 10
163 163_Clinical_GA* SEEM030 AESU00000000 SRX105761 46917 754297 Salmonella enterica subsp. enterica serovar Montevideo str. SARB30
204 204_Chicken SEEM19N AESV00000000 SRX101465, SRX118774 48457 710598 Salmonella enterica subsp. enterica serovar Montevideo str. 19N
205 205_Soup* SEEM29N AESW00000000 SRX105762 48459 754298 Salmonella enterica subsp. enterica serovar Montevideo str. 29N
206 206_Clinical* SEEM42N AESX00000000 SRX105763 48461 754299 Salmonella enterica subsp. enterica serovar Montevideo str. 42N
207 207_Sunflower* SEEM41H AESY00000000 SRX105764, SRX105765 49127 754300 Salmonella enterica subsp. enterica serovar Montevideo str. 4441 H
209 209_Romaine SEEM801 AESZ00000000 SRX101467 49129 710599 Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01
210 210_Mozzarella SEEM877 AETB00000000 SRX101651 49987 710600 Salmonella enterica subsp. enterica serovar Montevideo str. 414877
211 211_ Perch SEEM867 AETC00000000 SRX101652, SRX118775 49989 710601 Salmonella enterica subsp. enterica serovar Montevideo str. 366867
212 212_Sea_Trout SEEM180 AETD00000000 SRX101653, SRX119985, SRX118776 49991 710602 Salmonella enterica subsp. enterica serovar Montevideo str. 413180
213 213_King Fish SEEM600 AETE00000000 SRX101659 49993 710603 Salmonella enterica subsp. enterica serovar Montevideo str. 446600
214 214_Black_Pepper_1 SEEM581 AETF00000000 SRX101660 49995 710604 Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1
215 215_Red_Pepper_2 SEEM501 AETG00000000 SRX101661, SRX119986, SRX118783 49997 710605 Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1
216 216_Black_Pepper_2 SEEM460 AETH00000000 SRX101666 50021 710607 Salmonella enterica subsp. enterica serovar Montevideo str. 609460
217 217_Drain_Swab SEEM020 AETI00000000 SRX103943, SRX103942, SRX118784, SRX119444 50023 710608 Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20
219 219_Red_Pepper_1 SEEM6152 AETJ00000000 SRX103944 51379 710609 Salmonella enterica subsp. enterica serovar Montevideo str. 556152
220 220_Clinical_NC_3 SEEM0077 AETK00000000 SRX103945 51381 710610 Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077
221 221_Clinical_NC_2 SEEM0047 AETL00000000 SRX103946, SRX118785, SRX119987 51383 710611 Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047
222 222_ Clinical_NC_5 SEEM0055 AETM00000000 SRX103951, SRX119988, SRX118786 51385 710612 Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055
223 223_Clinical_NC_1 SEEM0052 AETN00000000 SRX103952, SRX119989, SRX118787 51387 710613 Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052
224 224_Clinical_OH_2 SEEM3312 AETO00000000 SRX103953 51389 710614 Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312
225 225_Clinical_OH_1 SEEM5258 AETP00000000 SRX103954 51391 710615 Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258
227 227_Pistachio_1 SEEM1156 AETQ00000000 SRX103955, SRX118788 51393 710616 Salmonella enterica subsp. enterica serovar Montevideo str. 315731156
228 228_Clinical_CT* SEEM5278 AHHS00000000 SRX105767 62845 754302 Salmonella enterica subsp. enterica serovar Montevideo str. CT_02035278
229 229_Pepper_Salami_2_CT* SEEM5318 AHHT00000000 SRX105768, SRX118789 62847 754303 Salmonella enterica subsp. enterica serovar Montevideo str. CT_02035318
230 230_Pepper_Salami_1_CT* SEEM5320 AHHU00000000 SRX105769, SRX119990, SRX118790 62849 754304 Salmonella enterica subsp. enterica serovar Montevideo str. CT_02035320
233 233_Calabrese_Salami_CT* SEEM5321 AHHV00000000 SRX105770, SRX118791 51967 754305 Salmonella enterica subsp. enterica serovar Montevideo str. CT_02035321
235 235_ Salami_Packaging_CT* SEEM5327 AHHW00000000 SRX105771 51973   Salmonella enterica subsp. enterica serovar Montevideo str. CT_02035327
236 236_Clinical_IA SEEM9199 AETR00000000 SRX105772 51975 710618 Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199
237 237_Lunch_Meat_IA_1 SEEM8282 AETS00000000 SRX103956, SRX118793, SRX119445 51979 710619 Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282
238 238_Lunch_Meat_IA_3 SEEM8283 AETT00000000 SRX103957, SRX118793, 51981 710620 Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283
239 239_Lunch_Meat_IA_2 SEEM8284 AETU00000000 SRX103958 51983 710621 Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284
240 240_Lunch_Meat_IA_4 SEEM8285 AETV00000000 SRX103959 51985 710622 Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285
241 241_Lunch_Meat_IA_6* SEEM8286 NA SRX105773, SRX105774 51987 754308 Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008286
242 242_Lunch_Meat_IA_5 SEEM8287 AETW00000000 SRX103960 51989 710623 Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287
349 349_Pomona* SEEPO729 AHIA00000000 SRX105896 61431 754430 Salmonella enterica subsp. enterica serovar Pomona str. ATCC 10729
397 237_Colony_1* resequence of FDA237 colony 1 NA SRX105897 51979 710619 Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282
398 237_Colony_2* resequence of FDA237 colony 2 NA SRX105898 51979 710619 Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282
399 237_Colony_3* resequence of FDA237 colony 3 NA SRX105899 51979 710619 Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282
400 237_Colony_4_Rep_1* resequence of FDA237 colony 4 NA SRX105900 51979 710619 Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282
401 400_Colony_4_Rep_2* resequence 1 of FDA237/FDA400 colony 4 NA SRX105901 51979 710619 Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282
402 400_Colony_4_Rep_3* resequence 2 of FDA237/FDA400 colony 4 NA SRX105902 51979 710619 Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282
403 400_Colony_4_Rep_4* resequence 3 of FDA237/FDA400 colony 4 NA SRX105903 51979 710619 Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282
515 237_1st_Round_Passage* serial resequencing FDA237 plate 1st round NA SRX105904 51979 710619 Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282
516 237_2nd_Round_Passage* serial resequencing FDA237 plate 2nd round NA SRX105905 51979 710619 Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282
517 237_3rd_Round_Passage* serial resequencing FDA237 plate 3rd round NA SRX105906 51979 710619 Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282
518 237_4th_Round_Passage* serial resequencing FDA237 plate 4th round NA SRX105907 51979 710619 Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282
NA Schwarzengrund_1 SASA CP001127     Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633
NA Schwarzengrund_2 SASB ABEJ01000001     Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480
NA Javiana SEJ ABEH00000000     Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433
  1. Entries include the FDA sample number, a simplified tree label, locus tags as well as various identifiers from the Genome BioProjects of these draft genomes. New accession and short read archive numbers are noted by an asterisk in the column entitled "Tree Label". All other accession numbers were published previously [5].