Table 1 List of isolates sequenced for comparison.
FDA Name | Tree Label | Locus Tag | GenBank | SRA | NCBI BioProject | Biosample | Full Name |
|---|---|---|---|---|---|---|---|
142 | 142_Pistachio_3 | SEEM315 | AESH00000000 | SRX101634, SRX118696, SRX119982 | 46535 | 710595 | Salmonella enterica subsp. enterica serovar Montevideo str. 315996572 |
144 | 144_Black_Pepper_6 | SEEM971 | AESI00000000 | SRX101636, SRX119983, SRX118697 | 46539 | 710606 | Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1 |
145 | 145_Black_Pepper_5 | SEEM973 | AESJ00000000 | SRX101642 | 46541 | 710617 | Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3 |
146 | 146_Black_Pepper_7 | SEEM974 | AESK00000000 | SRX101643 | 46543 | 710624 | Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4 |
147 | 147_Black_Pepper_3 | SEEM201 | AESL00000000 | SRX101644 | 46545 | 710625 | Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1 |
148 | 148_Black_Pepper_4 | SEEM202 | AESM00000000 | SRX101645, SRX118768 | 46547 | 710626 | Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2 |
155 | 155_ Clinical_NC_4 | SEEM054 | AESO00000000 | SRX101647, SRX118769 | 46903 | 710628 | Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054 |
156 | 156_Clinical_OH_3 | SEEM675 | AESP00000000 | SRX101648, SRX119984, SRX118770 | 46905 | 710629 | Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675 |
157 | 157_Clinical_CA | SEEM965 | AESQ00000000 | SRX101649, SRX119443, SRX118771 | 46907 | 710596 | Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965 |
158 | 158_Clinical_MD | SEEM507 | AETA00000000 | SRX101650 | 49405 | 710597 | Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507 |
160 | 160_Clinical_FL* | SEEM031 | AESR00000000 | SRX105725 | 46911 | 754243 | Salmonella enterica subsp. enterica serovar Montevideo str. SARB31 |
161 | 161_Clinical_1993* | SEEM710 | AESS00000000 | SRX105759 | 46913 | 754295 | Salmonella enterica subsp. enterica serovar Montevideo str. ATCC BAA710 |
162 | 162_Reference* | SEEM010 | AEST00000000 | SRX105760 | 46915 | 754296 | Salmonella enterica subsp. enterica serovar Montevideo str. LQC 10 |
163 | 163_Clinical_GA* | SEEM030 | AESU00000000 | SRX105761 | 46917 | 754297 | Salmonella enterica subsp. enterica serovar Montevideo str. SARB30 |
204 | 204_Chicken | SEEM19N | AESV00000000 | SRX101465, SRX118774 | 48457 | 710598 | Salmonella enterica subsp. enterica serovar Montevideo str. 19N |
205 | 205_Soup* | SEEM29N | AESW00000000 | SRX105762 | 48459 | 754298 | Salmonella enterica subsp. enterica serovar Montevideo str. 29N |
206 | 206_Clinical* | SEEM42N | AESX00000000 | SRX105763 | 48461 | 754299 | Salmonella enterica subsp. enterica serovar Montevideo str. 42N |
207 | 207_Sunflower* | SEEM41H | AESY00000000 | SRX105764, SRX105765 | 49127 | 754300 | Salmonella enterica subsp. enterica serovar Montevideo str. 4441 H |
209 | 209_Romaine | SEEM801 | AESZ00000000 | SRX101467 | 49129 | 710599 | Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01 |
210 | 210_Mozzarella | SEEM877 | AETB00000000 | SRX101651 | 49987 | 710600 | Salmonella enterica subsp. enterica serovar Montevideo str. 414877 |
211 | 211_ Perch | SEEM867 | AETC00000000 | SRX101652, SRX118775 | 49989 | 710601 | Salmonella enterica subsp. enterica serovar Montevideo str. 366867 |
212 | 212_Sea_Trout | SEEM180 | AETD00000000 | SRX101653, SRX119985, SRX118776 | 49991 | 710602 | Salmonella enterica subsp. enterica serovar Montevideo str. 413180 |
213 | 213_King Fish | SEEM600 | AETE00000000 | SRX101659 | 49993 | 710603 | Salmonella enterica subsp. enterica serovar Montevideo str. 446600 |
214 | 214_Black_Pepper_1 | SEEM581 | AETF00000000 | SRX101660 | 49995 | 710604 | Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1 |
215 | 215_Red_Pepper_2 | SEEM501 | AETG00000000 | SRX101661, SRX119986, SRX118783 | 49997 | 710605 | Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1 |
216 | 216_Black_Pepper_2 | SEEM460 | AETH00000000 | SRX101666 | 50021 | 710607 | Salmonella enterica subsp. enterica serovar Montevideo str. 609460 |
217 | 217_Drain_Swab | SEEM020 | AETI00000000 | SRX103943, SRX103942, SRX118784, SRX119444 | 50023 | 710608 | Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20 |
219 | 219_Red_Pepper_1 | SEEM6152 | AETJ00000000 | SRX103944 | 51379 | 710609 | Salmonella enterica subsp. enterica serovar Montevideo str. 556152 |
220 | 220_Clinical_NC_3 | SEEM0077 | AETK00000000 | SRX103945 | 51381 | 710610 | Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077 |
221 | 221_Clinical_NC_2 | SEEM0047 | AETL00000000 | SRX103946, SRX118785, SRX119987 | 51383 | 710611 | Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047 |
222 | 222_ Clinical_NC_5 | SEEM0055 | AETM00000000 | SRX103951, SRX119988, SRX118786 | 51385 | 710612 | Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055 |
223 | 223_Clinical_NC_1 | SEEM0052 | AETN00000000 | SRX103952, SRX119989, SRX118787 | 51387 | 710613 | Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052 |
224 | 224_Clinical_OH_2 | SEEM3312 | AETO00000000 | SRX103953 | 51389 | 710614 | Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312 |
225 | 225_Clinical_OH_1 | SEEM5258 | AETP00000000 | SRX103954 | 51391 | 710615 | Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258 |
227 | 227_Pistachio_1 | SEEM1156 | AETQ00000000 | SRX103955, SRX118788 | 51393 | 710616 | Salmonella enterica subsp. enterica serovar Montevideo str. 315731156 |
228 | 228_Clinical_CT* | SEEM5278 | AHHS00000000 | SRX105767 | 62845 | 754302 | Salmonella enterica subsp. enterica serovar Montevideo str. CT_02035278 |
229 | 229_Pepper_Salami_2_CT* | SEEM5318 | AHHT00000000 | SRX105768, SRX118789 | 62847 | 754303 | Salmonella enterica subsp. enterica serovar Montevideo str. CT_02035318 |
230 | 230_Pepper_Salami_1_CT* | SEEM5320 | AHHU00000000 | SRX105769, SRX119990, SRX118790 | 62849 | 754304 | Salmonella enterica subsp. enterica serovar Montevideo str. CT_02035320 |
233 | 233_Calabrese_Salami_CT* | SEEM5321 | AHHV00000000 | SRX105770, SRX118791 | 51967 | 754305 | Salmonella enterica subsp. enterica serovar Montevideo str. CT_02035321 |
235 | 235_ Salami_Packaging_CT* | SEEM5327 | AHHW00000000 | SRX105771 | 51973 | Â | Salmonella enterica subsp. enterica serovar Montevideo str. CT_02035327 |
236 | 236_Clinical_IA | SEEM9199 | AETR00000000 | SRX105772 | 51975 | 710618 | Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199 |
237 | 237_Lunch_Meat_IA_1 | SEEM8282 | AETS00000000 | SRX103956, SRX118793, SRX119445 | 51979 | 710619 | Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282 |
238 | 238_Lunch_Meat_IA_3 | SEEM8283 | AETT00000000 | SRX103957, SRX118793, | 51981 | 710620 | Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283 |
239 | 239_Lunch_Meat_IA_2 | SEEM8284 | AETU00000000 | SRX103958 | 51983 | 710621 | Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284 |
240 | 240_Lunch_Meat_IA_4 | SEEM8285 | AETV00000000 | SRX103959 | 51985 | 710622 | Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285 |
241 | 241_Lunch_Meat_IA_6* | SEEM8286 | NA | SRX105773, SRX105774 | 51987 | 754308 | Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008286 |
242 | 242_Lunch_Meat_IA_5 | SEEM8287 | AETW00000000 | SRX103960 | 51989 | 710623 | Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287 |
349 | 349_Pomona* | SEEPO729 | AHIA00000000 | SRX105896 | 61431 | 754430 | Salmonella enterica subsp. enterica serovar Pomona str. ATCC 10729 |
397 | 237_Colony_1* | resequence of FDA237 colony 1 | NA | SRX105897 | 51979 | 710619 | Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282 |
398 | 237_Colony_2* | resequence of FDA237 colony 2 | NA | SRX105898 | 51979 | 710619 | Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282 |
399 | 237_Colony_3* | resequence of FDA237 colony 3 | NA | SRX105899 | 51979 | 710619 | Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282 |
400 | 237_Colony_4_Rep_1* | resequence of FDA237 colony 4 | NA | SRX105900 | 51979 | 710619 | Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282 |
401 | 400_Colony_4_Rep_2* | resequence 1 of FDA237/FDA400 colony 4 | NA | SRX105901 | 51979 | 710619 | Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282 |
402 | 400_Colony_4_Rep_3* | resequence 2 of FDA237/FDA400 colony 4 | NA | SRX105902 | 51979 | 710619 | Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282 |
403 | 400_Colony_4_Rep_4* | resequence 3 of FDA237/FDA400 colony 4 | NA | SRX105903 | 51979 | 710619 | Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282 |
515 | 237_1st_Round_Passage* | serial resequencing FDA237 plate 1st round | NA | SRX105904 | 51979 | 710619 | Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282 |
516 | 237_2nd_Round_Passage* | serial resequencing FDA237 plate 2nd round | NA | SRX105905 | 51979 | 710619 | Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282 |
517 | 237_3rd_Round_Passage* | serial resequencing FDA237 plate 3rd round | NA | SRX105906 | 51979 | 710619 | Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282 |
518 | 237_4th_Round_Passage* | serial resequencing FDA237 plate 4th round | NA | SRX105907 | 51979 | 710619 | Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282 |
NA | Schwarzengrund_1 | SASA | CP001127 | Â | Â | Â | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 |
NA | Schwarzengrund_2 | SASB | ABEJ01000001 | Â | Â | Â | Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480 |
NA | Javiana | SEJ | ABEH00000000 | Â | Â | Â | Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433 |