Skip to main content

Advertisement

Table 4 Variable SNP calls discovered with resequencing and results after these were passed through our data filter.

From: High resolution clustering of Salmonella enterica serovar Montevideo strains using a next-generation sequencing approach

Position Description
204781 Missing after MUSCLE
255578 Homopolymer (8 T/A)
355131 Missing after MUSCLE
756435 Homopolymer (9 C/G)
1070504 SNP in Gap
1097814 Homopolymer (9 T/A)
1179704 Homopolymer (7 T/A)
1205130 Good (but ambiguous after looking at assembly)
1368882 Missing after MUSCLE
1642240 Missing after MUSCLE
1693620 Homopolymer (6 T/A)
1713322 Missing after MUSCLE
1806153 Homopolymer (6 T/A)
2087876 Missing after MUSCLE
2354057 Homopolymer (6 T/A)
2545225 Missing after MUSCLE
3193883 Homopolymer (7 T/A)
3823524 Good
4257557 Homopolymer (8 T/A)
4545198 SNP in Gap
4545878 Duplicated in other Salmonella (Elongation Factor Tu)
4546413 SNP in Gap
4548105 23S rRNA
  1. Details of the variation arising from resequencing are listed including the variable site location, a description of the variant, the nucleotide change and corrections during our rapid data analysis pipeline.