Table 1 Pairwise concordance between genotyping methods
| Â | Alchemy | |||
|---|---|---|---|---|
MouseDivGeno | AA | AB | BB | N |
AA | 127,867,623 | 1,920,909 | 25,627 | 1,026,558 |
AB | 769,150 | 16,433,765 | 635,019 | 1,116,810 |
BB | 3,425 | 1,257,523 | 29,282,297 | 560,353 |
NN | 931,375 | 1,458,539 | 277,201 | 400,965 |
V | 132,229 | 76,720 | 63,696 | 513,629 |
| Â | BRLMM-P 2D | |||
MouseDivGeno | AA | AB | BB | N |
AA | 129,030,882 | 824,258 | 20,829 | 964,748 |
AB | 1,089,922 | 17,190,764 | 335,325 | 338,733 |
BB | 27,880 | 1,628,799 | 29,044,569 | 402,350 |
NN | 1,037,029 | 1,469,896 | 258,170 | 302,985 |
V | 104,122 | 361,969 | 52,523 | 267,660 |
| Â | BRLMM-P 2D | |||
Alchemy | AA | AB | BB | N |
AA | 128,281,002 | 675,020 | 16,046 | 731,734 |
AB | 1,865,751 | 18,131,854 | 388,169 | 761,682 |
BB | 60,277 | 987,808 | 28,913,772 | 321,983 |
NN | 1,082,805 | 1,681,004 | 393,429 | 461,077 |