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Table 3 Genotype calls for an F1 hybrid compared to its parental strains

From: Discovery of novel variants in genotyping arrays improves genotype retention and reduces ascertainment bias

   (C57BL/6JxCAST/EiJ)F1
C57BL/6J CAST/EiJ AA BB AB V N Margin
AA AA 231,536 8 149 900 6,311 238,904
BB BB 0 204 1 1 3 209
AA BB 8,275 8,927 156,872 1,797 12,348 188,219
BB AA 4 12 6 0 3 25
AA V 12,605 19 1,681 1,578 4,445 20,328
BB V 0 10 0 1 0 11
V AA 4 0 0 1 0 5
V BB 0 9 2 1 1 13
V V 3 0 0 11 0 14
AA AB 5,936 13 6,221 190 1,345 13,705
BB AB 0 7 1 0 2 10
AB AA 52 0 7 0 0 59
AB BB 2 1,047 467 12 148 1,676
AB AB 6 12 1,939 26 75 2,058
AA N 27,921 3,193 22,039 508 6,650 60,311
BB N 0 14 0 0 0 14
AB N 4 106 136 5 27 278
V N 0 4 0 0 0 4
N N 36 3 13 0 2 54
N AA 267 0 0 1 7 275
N BB 3 5 116 0 16 140
N AB 3 0 2 0 0 5
V AB 0 0 0 1 0 1
AB V 0 13 16 6 3 38
N V 4 0 0 2 1 7
   286,661 13,606 189,668 5,041 31,387 526,363