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Figure 5 | BMC Genomics

Figure 5

From: Genome-wide SNP discovery in walnut with an AGSNP pipeline updated for SNP discovery in allogamous organisms

Figure 5

Frequency distribution (bottom of each figure) and quantile box (top of each figure) of SOLiD read mapping depths in walnut BESs (A and B) and SNP folded variant frequency ( FVF ) (C and D) for true-positive SNPs (A and C) and false positive SNPs (B and D). Frequencies and quantiles were computed from Infinium genotyping of 6,000 SNP markers and corresponding data of read mapping depth and FVF in SNP discovery.

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