Table 1 Summary of small RNA sequencing
From: Characterization of microRNAs expression during maize seed development
| Â | Seed | Leaf | ||
|---|---|---|---|---|
| Â | Unique reads | Total reads | Unique reads | Total reads |
Non-coding RNAs | ||||
rRNA | 48,744 (0.90%) | 496,691 (5.12%) | 98,035 (4.70%) | 1,923,961 (21.36%) |
tRNA | 6,190 (0.11%) | 197,396 (2.03%) | 13,441 (0.64%) | 639,236 (7.10%) |
siRNA | 145,973 (2.71%) | 476,425 (4.91%) | 42,910 (2.06%) | 173,554 (1.93%) |
snRNA | 1,828 (0.03%) | 4,821 (0.05%) | 1,169 (0.06%) | 2,399 (0.03%) |
snoRNA | 557 (0.01%) | 949 (0.01%) | 504 (0.02%) | 1,186 (0.01%) |
Protein-coding RNAs | ||||
exon | 590,744 (10.95%) | 1,201,276 (12.38%) | 307,933 (14.74%) | 810,348 (8.90%) |
intron | 747,218 (13.85%) | 1,494,227 (15.40%) | 310,191 (14.86%) | 656,538 (7.29%) |
Known miRNAs | ||||
mature | 226 (0%) | 462,609 (4.77%) | 250 (0%) | 3,098,983 (34.41%) |
mature star | 97 (0%) | 1,697 (0.02%) | 131 (0%) | 8,915 (0.10%) |
Other sRNAs | 3,854,724 (71.43%) | 5,369,670 (55.32%) | 1,313,335 (62.90%) | 1,690,443 (18.77%) |
Total | 5,396,301 (100%) | 9,705,761 (100%) | 2,087,899 (100%) | 9,005,563 (100%) |