Table 4 Genes significantly different in mid intestine of fish fed PP diet
Probe name1 | ACC2 | FC ± SEM3 | Identity4 |
|---|---|---|---|
Immune function and stress related | Â | Â | Â |
Ssa#CK897125 | CK897125 | 7.6 ± 1.1 | B-cell linker |
Ssa#CL60Contig3 | X70167 | 5.2 ± 1.2 | MHC class II antigen beta chain |
Ssa#STIR13675 | TC71772 | 5.0 ± 1.3 | CD209f |
Ssa#NP9934055 | NP9934055 | 4.8 ± 1.4 | T cell receptor alpha |
Ssa#STIR21272 | TC82967 | 4.3 ± 1.2 | Interferon inducible mx protein |
Ssa#S35685629 | S35685629 | 4.3 ± 1.0 | TCR-gamma |
Ssa#S30239635 | S30239635 | 2.8 ± 1.2 | IRF1 |
Ssa#STIR10385 | TC67231 | 2.5 ± 1.1 | Vig-2 protein |
Ssa#STIR15805 | TC74805 | 2.4 ± 1.0 | cd3 epsilon |
Ssa#STIR05606 | BT056756 | 2.4 ± 1.1 | β2 microglobulin |
Ssa#gi156446662 | EF579742 | 2.0 ± 1.2 | MyD88 |
Ssa#CL81Contig1 | BT072778 | 2.0 ± 1.1 | Virus induced TRIM protein |
Ssa#S37438814 | S37438814 | 2.0 ± 1.0 | CD3 gamma/delta |
Ssa#STIR00071_2 | DW580947 | 2.0 ± 1.2 | Interferon induced protein 35 |
Ssa#S18833713 | S18833713 | −7.5 ± 1.2 | Serum lectin 2 |
Ssa#CK882427 | CK882427 | −3.2 ± 1.3 | Serum amyloid A |
Ssa#S35474845 | S35474845 | −3.0 ± 1.1 | HSP β-7 |
Ssa#S35677496 | S35677496 | −2.9 ± 1.1 | CCR3 |
Ssa#S31986130 | S31986130 | −2.7 ± 1.2 | Macrophage colony stimulating factor receptor |
Ssa#S18892409 | S18892409 | −2.7 ± 1.1 | IgM |
Ssa#STIR03818 | NM_001141099 | −2.4 ± 1.3 | CXC13 |
Ssa#STIR19205 | TC79827 | −2.3 ± 1.1 | HSP 70a |
Ssa#STIR13083 | TC70912 | −2.3 ± 1.2 | SAMHD1 |
Ssa#S35663823 | S35663823 | −2.2 ± 1.2 | Complement c1q |
Ssa#S35583279 | S35583279 | −2.1 ± 1.0 | IL-17D |
Ssa#S35517748 | S35517748 | −2.0 ± 1.1 | HSP 30 |
Ssa#S35536386 | S35536386 | −2.0 ± 1.1 | HSP β-11 |
Omy#gi31087931 | AY160984 | −2.0 ± 1.2 | IL-8 |
Ssa#TC106255 | TC106255 | −2.0 ± 1.1 | Galectin-4 |
Cell proliferation and apoptosis | Â | Â | Â |
Ssa#S35582566 | S35582566 | 7.1 ± 1.2 | Caspase-14 |
Ssa#CL201Ctg1 | NM_001139921 | 2.4 ± 1.0 | Caspase-3 |
Ssa#S35693335 | S35693335 | 2.2 ± 1.0 | Caspase 8 |
Ssa#S32005165 | S32005165 | −9.4 ± 1.0 | DNA topoisomerase 2-alpha |
Omy#S34421775 | S34421775 | −6.6 ± 1.5 | Replication factor C subunit 3 |
Omy#CA346576 | CA346576 | −4.5 ± 1.2 | Tetraspanin-14 |
Ssa#CA038824 | CA038824 | −3.9 ± 1.1 | Fgfr3 protein |
Omy#S34313679 | S34313679 | −3.6 ± 1.4 | Cyclin A1 |
Omy#S22901990 | S22901990 | −3.4 ± 1.0 | Chromodomain-helicase-DNA-binding protein 7 |
Ssa#S47728937 | S47728937 | −3.1 ± 1.1 | Tetraspanin-16 |
Ssa#S35496360 | S35496360 | −2.9 ± 1.0 | DNA-repair protein complementing XP-A cells |
Ssa#S35490761_S | S35490761 | −2.7 ± 1.1 | Transcription factor HES-1 |
Ssa#STIR38390 | TC108636 | −2.7 ± 1.3 | RNA helicase |
Ssa#S35531441 | S35531441 | −2.4 ± 1.1 | Melanoma-derived growth regulatory protein |
Ssa#STIR17200 | TC76867 | −2.4 ± 1.0 | Tumor necrosisalpha-induced protein 2 |
Protein metabolism | Â | Â | Â |
Ssa#S35499913 | S35499913 | 6.5 ± 1.0 | Titin |
Ssa#S31974046 | S31974046 | 4.2 ± 1.1 | Cathepsin C |
Ssa#S30293144 | S30293144 | 3.9 ± 1.5 | Proteasome subunit alpha type-5 |
Ssa#STIR05302 | BT046757 | 3.2 ± 1.1 | Proteasome subunit beta type-7 |
Ssa#CL233Ctg1 | BT072668 | 3.0 ± 1.0 | Cathepsin Z |
Omy#S15290109 | S15290109 | 3.0 ± 1.2 | Keratin e1 |
Ssa#STIR25562 | TC89420 | 3.0 ± 1.1 | Troponinskeletal muscle |
Ssa#STIR20536 | TC81827 | 2.9 ± 1.1 | Cathepsin A |
Ssa#STIR24947 | TC88495 | 2.8 ± 1.2 | Keratin 18 |
Ssa#DY714088 | DY714088 | 2.7 ± 1.0 | Ribosomal protein S6 kinase b |
Ssa#KSS4531 | KSS4531 | 2.6 ± 1.1 | Ubiquitin-conjugating enzyme E2 |
Ssa#STIR08978 | TC65424 | 2.2 ± 1.0 | Eukaryotic translation initiation factor 4e |
Ssa#DY712052 | DY712052 | 2.0 ± 1.1 | Gamma-tubulin complex component 4 |
Ssa#S30279979 | S30279979 | 2.0 ± 1.2 | Eukaryotic translation initiation factor 2 subunit 1 |
Ssa#S30240560 | S30240560 | 2.0 ± 1.2 | β-actin |
Ssa#KSS1565 | KSS1565 | 2.0 ± 1.0 | Proteasome subunit alpha type-6 |
Ssa#KSSb2668 | KSSb2668 | 2.0 ± 1.2 | Tubulin beta-1 chain |
Ssa#STIR39880 | TC110797 | 2.0 ± 1.1 | Proteasome subunit alpha type-7 |
Ssa#S31996856 | S31996856 | 2.0 ± 1.1 | E3 ubiquitin-protein ligase RNF128 |
Ssa#STIR19643 | TC80514 | −3.9 ± 1.3 | Myosin light chain 1–3 |
Ssa#TC76471 | TC76471 | −3.6 ± 1.2 | Tropomyosin-1 alpha chain |
Ssa#AJ425777 | AJ425777 | −2.7 ± 1.3 | 60 S ribosomal protein L34 |
Ssa#STIR11900 | TC69277 | −2.5 ± 1.1 | Myosin ic |
Ssa#S35582711 | S35582711 | −2.3 ± 1.0 | Tropomyosin-1 alpha |
Ssa#S35505113 | S35505113 | −2.2 ± 1.1 | 60 S ribosomal protein L30 |
Ssa#FC072705 | FC072705 | −2.1 ± 1.1 | 40 S ribosomal protein S10 |
Omy#CX150249 | CX150249 | −2.1 ± 1.0 | 60 S ribosomal protein L36 |
Lipid metabolism | Â | Â | Â |
Ssa#CB509140 | CB509140 | 25.3 ± 1.2 | Fatty acid-binding protein |
Ssa#S31963508 | S31963508 | 14.5 ± 1.5 | Apolipoprotein A-I |
Ssa#STIR00045_2 | AY170327 | 5.2 ± 1.0 | PUFA elongase 5A |
Ssa#STIR00100_2 | CK887422 | 4.7 ± 1.0 | Delta-6 fatty acyl desaturase |
Omy#S18154618 | S18154618 | 4.4 ± 1.2 | Glycolipid transfer protein |
Ssa#STIR00093_4 | AF478472 | 4.3 ± 1.1 | Delta-5 fatty acyl desaturase |
Energy and mitochondrial activity/kinases | Â | Â | Â |
Ssa#STIR00144_4 | TC64612 | 4.2 ± 1.0 | Glyceraldehyde-3-phosphate dehydrogenase |
Ssa#STIR39924 | TC110855 | 2.6 ± 1.2 | Cytochrome P450 |
Ssa#S32006874 | S32006874 | 2.3 ± 1.1 | Peroxisomal membrane protein 11 C |
Ssa#S30263228 | S30263228 | 2.4 ± 1.1 | Succinate dehydrogenase |
Ssa#S35661441 | S35661441 | 2.0 ± 1.0 | Fructose-1.6-bisphosphatase 1 |
Ssa#S32000347 | S32000347 | −2.5 ± 1.2 | Hemoglobin subunit beta-1 |
Cellular transport | Â | Â | Â |
Ssa#S30284157 | S30284157 | 23.6 ± 1.2 | Solute carrier family 22 |
Ssa#STIR21606 | C83482 | 9.1 ± 1.2 | Solute carrier family 16 |
Ssa#DW575876 | DW575876 | 7.2 ± 1.3 | Solute carrier family 39 |
Ssa#STIR19539 | TC80341 | 4.6 ± 1.0 | Solute carrier family 31 |
Ssa#STIR19539 | S35536215 | 2.8 ± 1.0 | Solute carrier family 25 |
Ssa#S35454393 | S35454393 | 2.1 ± 1.1 | Solute carrier family 27 |
Omy#TC172518 | TC172518 | −2.2 ± 1.1 | Beta globin |
Ssa#CK991045 | CK991045 | −2.0 ± 1.0 | Hemoglobin subunit alpha |