Transcriptome sequencing of Eucalyptus camaldulensis seedlings subjected to water stress reveals functional single nucleotide polymorphisms and genes under selection

Table 2 Read counts of significant genes under control and stress treatments

Gene_id	KC1	MC1	PC1	KS1	MS1	PS1	logFC	FDR
Eucgr.K02440	145	81	98	0	0	0	−35.5	2E-35
CUFF.8283	0	0	0	20	4	22	31.8	2E-06
Eucgr.L01022	0	1	1	82	3	161	5.8	8E-17
Eucgr.I02271	6	1	43	3025	1982	7510	7.1	1E-62
Eucgr.I01041	120	39	138	0	0	0	−35.3	3E-33
Eucgr.H04038	0	2	3	790	199	634	7.4	7E-44
Eucgr.J00639	2	2	6	248	187	563	5.8	5E-33
Eucgr.J00493	0	0	0	727	130	181	36.4	2E-43
Eucgr.H00163	4	0	1	382	218	461	6.9	6E-39
Eucgr.G01843	0	0	0	86	47	113	34.3	6E-22
Eucgr.A02965	10	44	91	0	0	0	−34.4	3E-23
Eucgr.F03575	89	17	40	0	0	0	−34.3	1E-22
Eucgr.F02915	26	25	90	0	0	0	−34.3	2E-22
Eucgr.F02733	0	1	0	60	96	38	7.1	3E-20
Eucgr.F02646	467	635	778	0	0	0	−38.1	2E-67
Eucgr.F01093	13	16	16	2534	973	2670	6.2	1E-49
CUFF.28412	0	0	0	843	400	1068	37.5	3E-56
Eucgr.F00644	2	11	10	4666	2578	10230	8.6	2E-75
Eucgr.F00195	41	44	17	0	0	0	−33.9	3E-19
Eucgr.E03257	1	1	3	251	142	436	6.5	3E-33

M = Mt.Isa; K = Katherine; P = Petford; C1- control; S1- stress; logFC – log fold change; FDR-false discovery rate.
Read counts of top 20 most differentially expressed transcripts under control (C1) and stress conditions (S1). E. grandis gene names are used when the predicted genes are mapped to E. grandis gene coordinates otherwise the predicted gene names are used with a pre-fix ‘CUFF’.

ISSN: 1471-2164