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Table 3 Gene identities of the most differentially expressed transcripts

From: Transcriptome sequencing of Eucalyptus camaldulensis seedlings subjected to water stress reveals functional single nucleotide polymorphisms and genes under selection

Gene_id

LogFC

FDR

AT_accession

TAIR_gene_annotation1

Eucgr.K02440

−35.5

2E-35

AT3G53190.1

Pectin lyase-like superfamily protein

CUFF.8283

31.8

2E-06

 

no-hit

Eucgr.L01022

5.8

8E-17

ATCG00020.1

photosystem II reaction center protein A

Eucgr.I02271

7.1

1E-62

AT3G12500.1

basic chitinase

Eucgr.I01041

−35.3

3E-33

AT3G10450.2

serine carboxypeptidase-like 7

Eucgr.H04038

7.4

7E-44

AT3G62420.1

basic region/leucine zipper motif 53

Eucgr.J00639

5.8

5E-33

AT5G21170.2

5'-AMP-activated protein kinase

Eucgr.J00493

36.4

2E-43

AT2G27510.1

ferredoxin 3

Eucgr.H00163

6.9

6E-39

AT2G38940.1

phosphate transporter 1;4

Eucgr.G01843

34.3

6E-22

AT5G45180.1

Flavin-binding monooxygenase

Eucgr.A02965

−34.4

3E-23

AT5G17050.1

UDP-glucosyl transferase

Eucgr.F03575

−34.3

1E-22

AT1G32860.1

Glycosyl hydrolase

Eucgr.F02915

−34.3

2E-22

 

no-hit

Eucgr.F02733

7.1

3E-20

AT1G78780.2

pathogenesis-related

Eucgr.F02646

−38.1

2E-67

AT5G09360.1

laccase 14

Eucgr.F01093

6.2

1E-49

AT4G27410.3

RD26 | NAC domain transcriptional regulator

CUFF.28412

37.5

3E-56

AT4G27450.1

Aluminium induced protein

Eucgr.F00644

8.6

2E-75

 

no-hit

Eucgr.F00195

−33.9

3E-19

AT5G42830.1

acyl-transferase

Eucgr.E03257

6.5

3E-33

AT2G33830.2

Dormancy/auxin associated

Eucgr.D02645

6.0

8E-47

AT3G61890.1

homeobox 12

Eucgr.D02610

−35.6

3E-36

AT1G73880.1

UDP-glucosyl transferase

Eucgr.D02390

−34.1

3E-21

AT5G49330.1

myb domain protein

Eucgr.A02214

−34.1

1E-20

AT1G28110.2

serine carboxypeptidase-like 45

Eucgr.A02209

−34.4

1E-23

AT1G28110.2

serine carboxypeptidase-like 45

Eucgr.A02209

−34.8

1E-27

AT2G33530.1

serine carboxypeptidase-like 46

Eucgr.D00606

7.2

1E-57

AT1G28330.4

dormancy-associated protein-like 1

Eucgr.A02070

5.8

5E-43

AT3G04070.1

NAC domain containing protein 47

Eucgr.C04029

−33.9

2E-19

AT2G24800.1

Peroxidase superfamily protein

Eucgr.C03801

−34.9

2E-28

AT1G67290.1

glyoxal oxidase-related protein

Eucgr.C03715

5.8

3E-17

AT5G56550.1

oxidative stress 3

Eucgr.C03715

6.7

5E-25

 

no-hit

Eucgr.A01963

−36.5

2E-47

AT2G42840.1

protodermal factor 1

Eucgr.C01020

−34.1

1E-20

AT5G58880.1

unknown protein

Eucgr.A01768

−35.3

6E-33

AT4G03270.1

Cyclin D6;1

Eucgr.B03987

6.4

5E-57

AT1G60470.1

galactinol synthase 4

Eucgr.B03602

−34.4

9E-24

 

no-hit

Eucgr.B01275

6.2

8E-20

AT5G18600.1

Thioredoxin superfamily protein

CUFF.12241

−35.7

3E-38

 

no-hit

Eucgr.L02741

−36.1

1E-42

AT5G17040.1

UDP-Glycosyltransferase superfamily protein

Eucgr.K01836

10.3

6E-88

AT5G06760.1

Late Embryogenesis Abundant 4-5

Eucgr.I02392

12.7

2E-85

AT2G37670.1

no-hit

Eucgr.C00146

−10.4

2E-84

AT2G22980.4

serine carboxypeptidase-like 13

Eucgr.F04160

−11.7

5E-83

AT5G09360.1

laccase 14

Eucgr.I01495

9.5

7E-79

AT3G12500.1

basic chitinase

Eucgr.I02395

7.8

7E-77

AT2G21490.1

dehydrin LEA

Eucgr.B02163

−9.5

3E-76

AT4G28780.1

GDSL-like Lipase/Acylhydrolase

Eucgr.H04427

−8.7

7E-74

AT3G06350.1

dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative

Eucgr.E00358

9.2

2E-73

AT4G17030.1

expansin-like B1

CUFF.37010

8.6

4E-72

AT2G47770.1

TSPO(outer membrane tryptophan-rich sensory protein)

Eucgr.G01342

−7.6

3E-71

AT4G15480.1

UDP-Glycosyltransferase superfamily protein

Eucgr.L02980

7.8

2E-70

AT4G27670.1

heat shock protein 21

Eucgr.K00423

7.9

2E-70

AT4G27670.1

heat shock protein 21

Eucgr.C01021

−10.8

6E-68

AT5G17050.1

UDP-glucosyl transferase 78D2

Eucgr.I01044

−10.5

3E-67

AT2G22960.1

alpha/beta-Hydrolases

Eucgr.F03917

−11.7

3E-66

 

no-hit

Eucgr.I01037

−7.9

3E-66

AT1G33540.1

serine carboxypeptidase-like 18

Eucgr.G01113

−8.3

6E-66

AT1G73290.1

serine carboxypeptidase-like 5

CUFF.9597

11.1

2E-65

AT5G63350.1

unknown protein

Eucgr.H02828

−7.2

6E-65

AT5G13930.1

Chalcone and stilbene synthase

Eucgr.K02961

7.7

3E-64

AT2G40300.1

ferritin 4

Eucgr.C02812

−7.2

5E-64

AT5G11420.1

unknown

Eucgr.I01954

−11.7

2E-63

AT1G69530.5

expansin A1

CUFF.1110

−7.2

5E-63

AT4G16730.1

terpene synthase 02

Eucgr.A02982

8.0

1E-62

 

no-hit

Eucgr.A02983

7.5

1E-62

 

no-hit

Eucgr.B00944

−9.3

2E-62

AT1G73620.1

Pathogenesis-related thaumatin

Eucgr.K01196

−7.6

2E-62

AT1G78570.1

rhamnose biosynthesis 1

Eucgr.K01402

37.9

3E-62

AT5G66780.1

unknown protein

CUFF.15800

37.9

6E-62

AT4G16260.1

Glycosyl hydrolase

Eucgr.H02579

−9.6

1E-61

AT5G09360.1

laccase 14

Eucgr.A01095

−7.5

2E-61

AT2G05790.1

O-Glycosyl hydrolases

Eucgr.K00883

−7.1

7E-61

AT4G03210.2

xyloglucan endotransglucosylase/hydrolase

Eucgr.K02657

−7.9

1E-60

AT1G75290.1

NAD(P)-binding Rossmann-fold superfamily protein

Eucgr.L01608

−8.3

8E-60

AT1G73270.1

serine carboxypeptidase-like 6

CUFF.31133

7.6

2E-59

AT1G43730.1

RNA-directed DNA polymerase (reverse transcriptase)

Eucgr.K01402

37.7

4E-59

AT5G66780.1

unknown protein

Eucgr.K03589

−6.8

4E-59

AT5G33370.1

GDSL-like Lipase/Acylhydrolase

Eucgr.H03385

8.4

6E-59

AT5G50850.1

Transketolase family protein

Eucgr.H00093

−7.8

4E-58

AT1G04680.1

Pectin lyase-like

Eucgr.A00203

−7.4

5E-58

AT3G16910.1

acyl-activating enzyme 7

Eucgr.F03878

7.9

6E-58

AT1G15330.1

Cystathionine beta-synthase

CUFF.38682

6.8

9E-58

 

no-hit

Eucgr.J01348

7.7

1E-57

AT5G15250.2

FTSH protease 6

Eucgr.B03992

−7.2

1E-57

AT5G49730.1

ferric reduction oxidase 6

Eucgr.E04218

−8.2

2E-56

AT5G09360.1

laccase 14

Eucgr.H00118

7.9

4E-56

AT1G04560.1

AWPM-19-like

Eucgr.I00519

−6.3

5E-56

AT4G33510.1

3-deoxy-d-arabino-heptulosonate 7-phosphate synthase

Eucgr.B02376

6.8

6E-56

AT3G46230.1

heat shock protein 17.4

Eucgr.F04203

9.4

6E-56

AT5G50080.1

ethylene response factor 110

Eucgr.G01115

−7.5

2E-55

AT4G12910.1

serine carboxypeptidase-like 20

Eucgr.A02790

6.3

3E-55

AT5G52300.2

CAP160 protein

Eucgr.C01388

−6.5

5E-55

AT2G10940.2

Bifunctional inhibitor/lipid-transfer protein

Eucgr.H04428

−6.3

2E-54

AT3G06350.1

dehydroquinate dehydratase, putative / shikimate dehydrogenase

Eucgr.I02267

7.0

4E-54

AT3G12500.1

basic chitinase

Eucgr.B03602

−7.2

5E-54

AT3G13510.1

Unknown Function

Eucgr.C00148

−9.3

5E-53

AT3G10450.2

serine carboxypeptidase-like 7

  1. 1The Arabidosis Information Resource.
  2. Gene models predicted from reference-guided mapping were BLAST searched against Arabidopsis protein data base. Arabidopsis homologs of top significant genes are presented. E. grandis gene names are used when the predicted genes are mapped to E. grandis gene coordinates otherwise the predicted gene names are used with a pre-fix ‘CUFF’. “CUFF” gene coordinates, read counts and gene identities of all significantly (P < 0.05; bonferroni correction) differentially expressed transcripts are presented in the Additional file 2.