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Table 5 Comparison of fold changes in gene expression between different treatments

From: Transcriptome sequencing of Eucalyptus camaldulensis seedlings subjected to water stress reveals functional single nucleotide polymorphisms and genes under selection

Gene_id

LogFC1

LogFC

AT_accession

TAIR gene

C0 vs C1

C1 vs S1

annotation

CUFF.28412

−31.9

37.5

AT4G27450.1

Aluminium_induced

Eucgr.J00493

−34.4

36.4

AT2G27510.1

ferredoxin3

Eucgr.G01843

−31.8

34.3

AT5G45180.1

Flavin-binding

CUFF.8283

−31.2

31.8

 

unknown

Eucgr.F00644

−3.9

8.6

 

unknown

Eucgr.H04038

−3.0

7.4

AT3G62420.1

basicregion/leucinezipper

Eucgr.D00606

−2.4

7.2

AT1G28330.4

dormancy-associated

Eucgr.I02271

2.4

7.1

AT3G12500.1

basicchitinase

Eucgr.F02733

−5.4

7.1

AT1G78780.2

pathogenesis-related

Eucgr.H00163

−2.8

6.9

AT2G38940.1

phosphatetransporter

Eucgr.C03715

−4.2

6.7

 

unknown

Eucgr.E03257

−4.4

6.5

AT2G33830.2

Dormancy/auxinassociated

Eucgr.B03987

−2.9

6.4

AT1G60470.1

galactinolsynthase4

Eucgr.F01093

1.9

6.2

AT4G27410.3

NAC_transcriptional_regulator

Eucgr.B01275

−4.9

6.2

AT5G18600.1

Thioredoxin

Eucgr.D02645

3.2

6.0

AT3G61890.1

homeobox12

Eucgr.L01022

−4.2

5.8

ATCG00020.1

photosystem-II_reaction_center_protein

Eucgr.C03715

−3.1

5.8

AT5G56550.1

oxidative_stress3

Eucgr.J00639

−1.9

5.8

AT5G21170.2

5'-AMP-activated_protein_kinase

Eucgr.A02070

−1.8

5.8

AT3G04070.1

NAC_domain_containing_protein

Eucgr.F00195

3.4

−33.9

AT5G42830.1

acyl-transferase_family_protein

Eucgr.C04029

2.7

−33.9

AT2G24800.1

Peroxidase

Eucgr.A02214

3.5

−34.1

AT1G28110.2

serine_carboxypeptidase-like

Eucgr.C01020

5.0

−34.1

 

unknown

Eucgr.D02390

5.6

−34.1

AT5G49330.1

myb_domain_protein

Eucgr.F02915

4.4

−34.3

 

Novel

Eucgr.F03575

1.4

−34.3

AT1G32860.1

Glycosyl hydrolase

Eucgr.A02965

3.0

−34.4

AT5G17050.1

UDP-glucosyl_transferase

Eucgr.A02209

4.6

−34.4

AT1G28110.2

serine_carboxy_peptidase-like45

Eucgr.B03602

1.3

−34.4

 

unknown

Eucgr.A02209

3.8

−34.8

AT2G33530.1

serine_carboxypeptidase-like

Eucgr.C03801

4.8

−34.9

AT1G67290.1

glyoxaloxidase-related

Eucgr.A01768

2.2

−35.3

AT4G03270.1

Cyclin

Eucgr.I01041

5.5

−35.3

AT3G10450.2

serine_carboxypeptidase-like7

Eucgr.K02440

1.4

−35.5

AT3G53190.1

Pectinlyase-like

Eucgr.D02610

3.7

−35.6

AT1G73880.1

UDP-glucosyl_transferase

CUFF.12241

3.4

−35.7

 

unknown

Eucgr.L02741

5.4

−36.1

AT5G17040.1

UDP-Glycosyltransferase

Eucgr.A01963

5.8

−36.5

AT2G42840.1

protodermal_factor

Eucgr.F02646

3.4

−38.1

AT5G09360.1

laccase14

  1. 1logFC- log fold change.
  2. Fold changes in the significantly differentiated genes between samples collected at the beginning (C0) and at the end of the experiment (C1) are compared with the fold changes in the significantly differentiated genes between control (C1) and stress (S1) treatments. E. grandis gene names are used when the predicted genes are mapped to E. grandis gene coordinates. Otherwise the predicted gene names are used with a pre-fix ‘CUFF’.