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Table 1 Expression data of predicted autophagy genes

From: The carbon starvation response of Aspergillus niger during submerged cultivation: Insights from the transcriptome and secretome

   Identifiers   Expressiona   Fold changeb   FDR q-valuesb
Gene (Predicted) function S. cerevisiae A. nidulans A. niger   Expd Day 1 Day 3 Day 6   Day 1 Day 3 Day 6   Day 1 Day 3 Day 6
atg1 Ser/thr kinase S000003148 AN1632 An04g03950   1.3 3.2 2.9 2.4   2.4 2.2 1.8   2.5E-07 1.1E-06 1.5E-05
atg2 Membrane protein S000005186 AN5491 An08g10270   3.9 8.2 8.2 7.8   2.1 2.1 2.0   2.8E-08 2.9E-08 6.8E-08
atg3 E2-like conjugating enzyme S000005290 AN11004 An03g04380   1.0 2.9 2.7 2.9   2.9 2.6 2.9   1.8E-08 6.1E-08 1.9E-08
atg4 Cysteine protease S000005167 AN3470 An11g11320   4.6 15.5 16.8 17.3   3.4 3.6 3.7   3.8E-10 2.1E-10 1.6E-10
atg6 Subunit of phosphatidylinositol 3-kinase complexes S000006041 AN10213 An16g07540   1.0 1.0 1.0 0.8   1.0 1.0 0.8   8.3E-01 8.2E-01 5.0E-02
atg7 Ubiquitine activating enzyme S000001214 AN7428 An02g14900c   1.5 5.6 5.1 3.0   3.8 3.5 2.0   5.7E-08 1.3E-07 6.4E-05
     An02g14910c   6.5 20.2 18.6 15.7   3.1 2.9 2.4   3.7E-10 1.1E-09 8.3E-09
atg8 Autophagosomal membrane protein S000000174 AN5131 An07g10020   23.8 69.1 75.0 69.7   2.9 3.2 2.9   3.1E-10 1.5E-10 3.1E-10
atg9 Transmembrane protein S000002308 AN3734 An06g01500   1.0 8.0 6.6 5.8   8.0 6.6 5.8   4.1E-11 1.3E-10 3.0E-10
atg10 E2-like conjugating enzyme S000003965 AN10728 An18g06610   1.2 1.4 1.4 1.2   1.1 1.2 1.0   1.0E-01 3.2E-02 7.3E-01
atg11 Adapter protein pexophagy and CVT pathway S000006253 AN2887 An02g07380   2.3 5.2 6.1 4.0   2.2 2.6 1.7   6.2E-08 8.3E-09 5.8E-06
atg12 Ubiquitin-like modifier S000000421 AN1760 An11g06920   0.6 0.8 0.7 0.6   1.4 1.2 1.0   6.4E-03 9.4E-02 7.9E-01
atg13 Regulatory subunit of Atg1 signalling complex S000006389 AN2076 An11g04460   0.8 1.1 1.1 1.2   1.4 1.4 1.6   3.3E-02 2.0E-02 6.6E-03
atg15 Vacuolar lipase S000000664 AN5919 An03g02820   2.6 7.1 6.0 5.5   2.7 2.3 2.1   5.3E-09 4.7E-08 1.9E-07
atg16 Atg12-Atg5-Atg16 complex S000004769 AN0090 An18g02220   1.7 3.5 3.3 2.9   2.1 2.0 1.8   7.1E-05 1.1E-04 6.7E-04
atg17 Scaffold protein of Atg1 signalling complex S000004415 AN6360 An02g04820   1.6 3.5 4.2 4.7   2.2 2.7 3.0   8.6E-09 9.4E-10 2.6E-10
atg18 Phosphoinositide binding protein S000001917 AN0127 An18g03070   2.0 1.8 2.8 2.6   0.9 1.4 1.3   3.7E-01 1.4E-03 4.7E-03
atg20 Sorting nexin family member S000002271 AN6351 An02g01390   4.5 7.7 8.4 9.0   1.7 1.8 2.0   6.1E-06 1.1E-06 3.3E-07
atg22 Vacuolar integral membrane protein S000000543 AN7437 An02g14810   5.7 10.1 9.2 8.9   1.8 1.6 1.6   5.3E-07 4.0E-06 6.8E-06
    AN7591 An09g03630   1.6 1.4 2.0 3.1   0.9 1.3 2.0   3.9E-01 2.0E-02 8.6E-06
    AN5876 An02g03340   1.9 1.3 1.0 1.0   0.7 0.5 0.6   8.7E-04 3.5E-06 1.3E-05
atg24 Sorting nexin S000003573 AN3584 An01g08520   2.8 4.9 4.8 4.9   1.7 1.7 1.7   2.0E-06 3.3E-06 2.3E-06
atg26 UDP-glucose:sterol glucosyltransferase S000004179 AN4601 An07g06610   3.8 10.3 9.8 7.6   2.7 2.6 2.0   2.7E-09 5.8E-09 2.2E-07
atg27 Type I membrane protein S000003714 AN0861 An01g13390   1.1 1.7 1.5 1.5   1.6 1.4 1.4   2.8E-06 1.8E-04 6.8E-05
atg28 Coiled-coil protein   AN1701 An04g03260   1.0 1.9 1.9 2.2   1.9 2.0 2.2   5.9E-06 3.7E-06 6.5E-07
atg29 Recruitment of proteins to the pre-autophagosomal structure S000006087 AN4832 An02g13480   1.0 2.5 2.4 2.7   2.4 2.3 2.6   3.2E-08 6.2E-08 1.2E-08
  1. amRNA abundance relative (%) to the gamma-actin (An15g00560) encoding transcript during exponential growth.
  2. bFold changes and FDR q-values for comparisons with transcriptome data from the exponential growth phase.
  3. cORF truncated by contig borders.
  4. dExponential growth phase.