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Table 1 Expression data of predicted autophagy genes

From: The carbon starvation response of Aspergillus niger during submerged cultivation: Insights from the transcriptome and secretome

  

Identifiers

 

Expressiona

 

Fold changeb

 

FDR q-valuesb

Gene

(Predicted) function

S. cerevisiae

A. nidulans

A. niger

 

Expd

Day 1

Day 3

Day 6

 

Day 1

Day 3

Day 6

 

Day 1

Day 3

Day 6

atg1

Ser/thr kinase

S000003148

AN1632

An04g03950

 

1.3

3.2

2.9

2.4

 

2.4

2.2

1.8

 

2.5E-07

1.1E-06

1.5E-05

atg2

Membrane protein

S000005186

AN5491

An08g10270

 

3.9

8.2

8.2

7.8

 

2.1

2.1

2.0

 

2.8E-08

2.9E-08

6.8E-08

atg3

E2-like conjugating enzyme

S000005290

AN11004

An03g04380

 

1.0

2.9

2.7

2.9

 

2.9

2.6

2.9

 

1.8E-08

6.1E-08

1.9E-08

atg4

Cysteine protease

S000005167

AN3470

An11g11320

 

4.6

15.5

16.8

17.3

 

3.4

3.6

3.7

 

3.8E-10

2.1E-10

1.6E-10

atg6

Subunit of phosphatidylinositol 3-kinase complexes

S000006041

AN10213

An16g07540

 

1.0

1.0

1.0

0.8

 

1.0

1.0

0.8

 

8.3E-01

8.2E-01

5.0E-02

atg7

Ubiquitine activating enzyme

S000001214

AN7428

An02g14900c

 

1.5

5.6

5.1

3.0

 

3.8

3.5

2.0

 

5.7E-08

1.3E-07

6.4E-05

    

An02g14910c

 

6.5

20.2

18.6

15.7

 

3.1

2.9

2.4

 

3.7E-10

1.1E-09

8.3E-09

atg8

Autophagosomal membrane protein

S000000174

AN5131

An07g10020

 

23.8

69.1

75.0

69.7

 

2.9

3.2

2.9

 

3.1E-10

1.5E-10

3.1E-10

atg9

Transmembrane protein

S000002308

AN3734

An06g01500

 

1.0

8.0

6.6

5.8

 

8.0

6.6

5.8

 

4.1E-11

1.3E-10

3.0E-10

atg10

E2-like conjugating enzyme

S000003965

AN10728

An18g06610

 

1.2

1.4

1.4

1.2

 

1.1

1.2

1.0

 

1.0E-01

3.2E-02

7.3E-01

atg11

Adapter protein pexophagy and CVT pathway

S000006253

AN2887

An02g07380

 

2.3

5.2

6.1

4.0

 

2.2

2.6

1.7

 

6.2E-08

8.3E-09

5.8E-06

atg12

Ubiquitin-like modifier

S000000421

AN1760

An11g06920

 

0.6

0.8

0.7

0.6

 

1.4

1.2

1.0

 

6.4E-03

9.4E-02

7.9E-01

atg13

Regulatory subunit of Atg1 signalling complex

S000006389

AN2076

An11g04460

 

0.8

1.1

1.1

1.2

 

1.4

1.4

1.6

 

3.3E-02

2.0E-02

6.6E-03

atg15

Vacuolar lipase

S000000664

AN5919

An03g02820

 

2.6

7.1

6.0

5.5

 

2.7

2.3

2.1

 

5.3E-09

4.7E-08

1.9E-07

atg16

Atg12-Atg5-Atg16 complex

S000004769

AN0090

An18g02220

 

1.7

3.5

3.3

2.9

 

2.1

2.0

1.8

 

7.1E-05

1.1E-04

6.7E-04

atg17

Scaffold protein of Atg1 signalling complex

S000004415

AN6360

An02g04820

 

1.6

3.5

4.2

4.7

 

2.2

2.7

3.0

 

8.6E-09

9.4E-10

2.6E-10

atg18

Phosphoinositide binding protein

S000001917

AN0127

An18g03070

 

2.0

1.8

2.8

2.6

 

0.9

1.4

1.3

 

3.7E-01

1.4E-03

4.7E-03

atg20

Sorting nexin family member

S000002271

AN6351

An02g01390

 

4.5

7.7

8.4

9.0

 

1.7

1.8

2.0

 

6.1E-06

1.1E-06

3.3E-07

atg22

Vacuolar integral membrane protein

S000000543

AN7437

An02g14810

 

5.7

10.1

9.2

8.9

 

1.8

1.6

1.6

 

5.3E-07

4.0E-06

6.8E-06

   

AN7591

An09g03630

 

1.6

1.4

2.0

3.1

 

0.9

1.3

2.0

 

3.9E-01

2.0E-02

8.6E-06

   

AN5876

An02g03340

 

1.9

1.3

1.0

1.0

 

0.7

0.5

0.6

 

8.7E-04

3.5E-06

1.3E-05

atg24

Sorting nexin

S000003573

AN3584

An01g08520

 

2.8

4.9

4.8

4.9

 

1.7

1.7

1.7

 

2.0E-06

3.3E-06

2.3E-06

atg26

UDP-glucose:sterol glucosyltransferase

S000004179

AN4601

An07g06610

 

3.8

10.3

9.8

7.6

 

2.7

2.6

2.0

 

2.7E-09

5.8E-09

2.2E-07

atg27

Type I membrane protein

S000003714

AN0861

An01g13390

 

1.1

1.7

1.5

1.5

 

1.6

1.4

1.4

 

2.8E-06

1.8E-04

6.8E-05

atg28

Coiled-coil protein

 

AN1701

An04g03260

 

1.0

1.9

1.9

2.2

 

1.9

2.0

2.2

 

5.9E-06

3.7E-06

6.5E-07

atg29

Recruitment of proteins to the pre-autophagosomal structure

S000006087

AN4832

An02g13480

 

1.0

2.5

2.4

2.7

 

2.4

2.3

2.6

 

3.2E-08

6.2E-08

1.2E-08

  1. amRNA abundance relative (%) to the gamma-actin (An15g00560) encoding transcript during exponential growth.
  2. bFold changes and FDR q-values for comparisons with transcriptome data from the exponential growth phase.
  3. cORF truncated by contig borders.
  4. dExponential growth phase.
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BMC Genomics

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