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Table 3 The distribution of repeats

From: Sequencing the genome of Marssonina brunnea reveals fungus-poplar co-evolution

Type

M. brunnea

B. cinerea

S. sclerotiorum

Number

Length (bp)

Number

Length (bp)

Number

Length (bp)

SINE1

0

0

0

0

0

0

DNA element

1,782

888,148

85

54,759

1,551

630,915

LINE2

502

583,811

0

0

1,712

671,898

LTR3

7,561

13,438,528

223

167,489

1,826

358,056

Low complexity

4,899

287,558

3,472

254,554

5,006

363,939

RC4

282

479,829

0

0

0

0

Satellite

1

41

0

0

1

64

Simple repeat

15,034

653,923

7,059

288,809

5,493

238,682

Unknown

9,122

5,519,980

1,099

197,624

1,572

243,540

  1. 1 SINE, short interspersed nuclear element.
  2. 2 LINE, long interspersed nuclear element.
  3. 3 LTR, long terminal repeat.
  4. 4 RC, rolling circle.