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Table 3 NBS-LRR and FIDEL sequences used for expression analysis using qRT-PCR

From: Global transcriptome analysis of two wild relatives of peanut under drought and fungi infection

Gene/Sequence abbreviation

Primer sequence Forward/Reverse

Amplicon size (bp)

PCR efficiency (%)

Regression coefficient R2

RGA11

GGCAAAGGTGATGCTACCTG/

160

95.86

0.996

TTCCCAAGGAAGTTGATCCT

RGA122

TTGCACCAACTTCTGGTTTG/

156

94.41

0.979

CAATGATATGCCCCGTCTCT

RGA156

TCTAGAAAGCGAGGAGCTCAA/

157

96.09

0.991

TGGATTGACTGGGATATGCTC

RGA256

AGCTTCACGGTGAGGAAGAA/

178

93.09

0.981

ATTCCGTGTTGCAGAACCTC

RGA390

CAGAACAACGAGAACAATCG/

150

104.76

0.999

TTACCGTCATCCGAAACTTG

FIDEL197

TGGCTACATCCCATCCTCTC/

167

113.25

0.994

GGGATTGAATGACTGTGACG

FIDEL274

AGCTTTTTGCTTCGGAACAG/

161

95.92

0.903

GGGTCACAGCCAAGACTCAT

FIDEL412

GAGTTAAACGCCAGCTTTGG/

183

95.25

0.999

CGGCGTTGGAAAGTAGACAT

FIDEL496

GCAAGCTCGTGTAGGGTTTC/

157

110.58

0.997

GCGTTAGTGACAGACGCAAA

60S*

TGGAGTGAGAGGTGCATTTG/

155

102.36

0.998

TCTTTTGACGACCAGGGAAC

ACT1*

TGGTCTCGGTTTCCTGAGTT/

114

94.13

0.995

 

AATACCACTCCAAAGCAAACG

   
  1. * Primer pair previously described [42].
  2. NBS-LRR and FIDEL sequences differentially expressed in silico between A. stenosperma inoculated with C. personatum or A. duranensis drought-stressed and their respective controls.