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Table 4 Haloarchaeal protein clusters (HOGs) identified with nine and 13 genome data sets.

From: The core and unique proteins of haloarchaea

  No. of clusters with original 9 genome data set No. of clusters removed from each category No. of clusters added to each category No. of clusters with 13 genome data set
cHOGs 799 15   784
cHOGs associated with COGs 288 6a   282
cHOGs associated with COGs & KOGs 422 3b   419
ucHOGs 89 6   83
nucHOGs 29 1c   28
tucHOGs 60 5d   55
aHOGs 3656   15 3671
aHOGs associated with COGs 409   6 415
aHOGs associated with COGs & KOGs 259   3 262
aHOGs with no associated COGs or KOGs 2988   6 2994
  1. a- Homolog for HOG0026 not identified in H. jeotgali. Homologs for HOG0069, HOG0288, and HOG1012 not identified in N. magadii. Homologs for HOG0231 and HOG0408 not identified in H. turkmenica.
  2. b- Homologs for HOG0166 and HOG0221 not identified in H. turkmenica. Homolog for HOG0518 not identified in H. jeotgali.
  3. c- Homolog for HOG0305 not identified in H. jeotgali.
  4. d- Homologs for HOG0048, HOG0714, and HOG0735 not identified in H. jeotgali. Homologs for HOG0120 and HOG0905 not identified in H. xanaduensis, N. magadii, or H. turkmenica.
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BMC Genomics

ISSN: 1471-2164

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