Skip to main content

Table 2 Box H/ACA snoRNA genes in E. histolytica

From: Computational prediction and validation of C/D, H/ACA and Eh_U3 snoRNAs of Entamoeba histolytica

snoRNA genes Len Seq Modification Antisense element Scaffold Start End Location
(nt) (%)
**ACA-Eh-SSU1315 121 96% SSU1315 6 + 7nt (5’) 100% DS571149 98793 98673 IR
ACA-Eh-SSU631 137 - SSU631 6 + 5nt (3’) DS572405 485 349 NA
   - SSU1114 8 + 9nt (5’) DS572405 485 349  
ACA-Eh-SSU1727 135 87% SSU1727 9 + 5nt (5’) 93% DS571346 12499 12633 IR/5'UTR
**ACA-Eh-SSU626 127 94% SSU626 6 + 6nt(3') 100% DS571463 13091 12965 IR
ACA-Eh-SSU461 142 - SSU461 7 + 5nt (3’) DS571171 90117 90258 IR
ACA-Eh-SSU1675 127 92% SSU1675 5 + 9nt (3') 93% DS571182 71521 71647 IR
*ACA-Eh-SSU526 126 94% SSU526 7 + 5nt (5') 100% DS571463 12972 13097 IR
*ACA-Eh-LSU3008 129 92% LSU3008 7 + 5nt (5') 100% DS571272 39423 39295 IR
ACA-Eh-LSU1172a 142 - LSU1172 5 + 4nt (5’) DS571149 73439 73580 IR
ACA-Eh-LSU1172b 141 - LSU1172 5 + 4nt (3’) DS571307 22719 22859 IR
ACA-Eh-LSU1107b 155 - LSU1107 11 + 3nt (5’) DS571159 2240 2086 IR
   - LSU1172 6 + 8nt (3’) DS571159 2240 2086  
   - 5.8 S52 8 + 3nt (3’) DS571159 2240 2086  
ACA-Eh-LSU1650 118 89% LSU1650 8 + 5nt (5’) 100% DS571267 21025 21142 IR
ACA-Eh-LSU3087 129 92% LSU3087 6 + 4nt (5') 100% DS571178 75373 75501 IR
ACA-EH-LSU2791 161   LSU2791 6 + 7nt (5’) DS571159 59530 59690 IR
ACA-Eh-LSU3155 151 88% LSU3155 5 + 6nt (3') 91% DS571255 1114 963 IR
ACA-Eh-LSU3221 152 79% LSU3221 9 + 4nt (5’) 91.6 DS571339 14712 14561 IR
ACA-Eh-LSU1159a 154 - LSU1159 4 + 5nt (5’) DS571589 7973 8126 IR
      DS571660 2209 2056  
ACA-Eh-LSU2700 144 86% LSU2700 8 + 3nt (3') 100% DS571160 113417 113560 IR
  144   LSU1159 6 + 4nt (3') 100% DS571160 113417 113560  
ACA-Eh-LSU1080 123 - LSU1080 3 + 7nt (5’) DS571228 4519 4641 IR
**ACA-Eh-LSU1343 137 - LSU1343 5 + 5nt (5’) DS571219 12011 11875 IR
ACA-Eh-LSU2997b 129 96% LSU2997 5 + 4nt (5') 100% DS571145 384477 384605 IR
ACA-Eh-LSU339 148 - LSU339 5 + 4nt (5’) DS571174 50939 50792 IR
ACA-Eh-LSU1123 148 - LSU1123 4 + 7nt (5’) DS571225 51991 52138 IR
ACA-Eh-LSU1005 148 - LSU1005 4 + 5nt (3’) DS571402 1263 1116 IR
ACA-Eh-LSU1236a 141 - LSU1236 3 + 6nt (3’) DS571481 789 649 IR
ACA-Eh-LSU1236b 141 - LSU1236 3 + 6nt (3’) DS571159 21643 21503 IR
ACA-Eh-LSU1107a 154 - LSU1107 11 + 4nt (3’) DS571208 46788 46941 IR/ 5'UTR
   - SSU1114 8 + 9nt (5’) DS571208 46788 46941  
**ACA-Eh-LSU2288 126 92% LSU2288 4 + 9nt(5') 100% DS571148 172182 172057 IR
    SSU1431 6 + 4nt (3') 90.0% DS571148 172182 172057  
ACA-Eh-LSU1159b 153 - LSU1159 5 + 5nt (5’) DS572251 153 1 NA
   - LSU3221 4 + 6nt (3’) DS572251 153 1  
   - SSU826 4 + 6nt (5’) DS572251 153 1  
ACA-Eh-LSU2997a 122 - LSU2997 5 + 6nt (5’) DS572347 1128 1007 NA
      DS572347 800 679  
      DS572347 464 343  
      DS572347 132 11  
ACA-Eh-5.8 S80a 140 - 5.8 S80 5 + 9nt (5’) DS571346 5092 4953 IR
ACA-Eh-5.8 S80b 132 - 5.8S80 5 + 6nt (5’) DS571206 1568 1437 IR
   - LSU3221 5 + 5nt (5’) DS571206 1568 1437  
ACA-Eh-SSU740 141 92% SSU740 4 + 7nt (3') 91% DS571156 54460 54320 EHI_182810 (+)
*ACA-Eh-SSU188 135 93% SSU188 6 + 3nt (5’) 89% DS571501 5129 5263 EHI_172000 (+)
*ACA-Eh-SSU1216 142 77% SSU1216 5 + 4nt (3’) 89% DS571247 8141 8000 EHI_016340 (−)
ACA-Eh-SSU299 169 94% SSU299 4 + 6nt (3') 100% DS571161 119527 119695 EHI_142230 (+)
ACA-Eh-SSU1212 129 93% SSU1212 9 + 7nt (3') 100% DS571169 105772 105900 EHI_098580 (−)
**ACA-Eh-LSU2809 156 82% LSU2809 12 + 3nt(3') 86.7% DS571148 116513 116668 EHI_012330 (−)
ACA-Eh-LSU2335 131 93% LSU2335 3 + 6nt (5’) 100% DS571304 17766 17896 EHI_161910 (−)
ACA-Eh-LSU2493 135 87% LSU2493 8 + 3nt (5’) 82% DS571228 40854 40720 EHI_161000 (−)
ACA-Eh-LSU1176 157 97% LSU1176 5 + 4nt (5') 100% DS571185 32437 32593 EHI_104450 (+)
ACA-Eh-LSU2268 135 97% LSU2268 7 + 3nt (3') 90% DS571154 24191 24057 EHI_178500 (−)
*ACA-Eh-5.8 S84 152 82% 5.8 S84 7 + 5nt (5’) 92% DS571169 105495 105646 EHI_098580 (−)
  1. ** snoRNAs validated by RT-PCR and Northern, * validated only by RT-PCR.
  2. Note: “Len.” denotes length of the snoRNA genes, “Seq.” is sequence identity of corresponding snoRNA genes in E. dispar, “Antisense element” denotes length of antisense element in E. histolytica and its sequence identity with E. dispar. “IR”, intergenic region, “NA”, no annotation. snoRNA located close to ribosomal protein genes . (+) and (−) represents snoRNA in sense and antisense orientation with respect to host gene.