Whole genome SNP discovery and analysis of genetic diversity in Turkey (Meleagris gallopavo)

BMC Genomics

Table 2 Heterozygosity and the number of SNP observed in each individual of different turkey populations

IDs	Homozygous NR SNP¹	Heterozygous SNP	Heterozygous SNP 5-10X	Genome covered 5-10X (bp)	Heterozygosity Kb^-1
L1a	663,406	659,351	369,849	320,663,179	1.15
L1b	686,583	648,928	385,673	396,624,720	0.97
L1c	626,434	737,472	403,423	375,734,398	1.07
L2a	827,249	755,318	504,787	532,961,711	0.95
L2b	896,728	757,226	514,059	554,379,839	0.93
L2c	869,872	562,653	311,525	329,283,144	0.95
L3a	568,439	762,252	519,228	532,049,588	0.98
L3b	434,157	427,393	567,558	527,841,728	0.99
L3c	608,276	834,241	164,167	166,315,925	1.08
L4a	720,530	616,567	440,086	454,905,713	0.80
L4b	760,762	692,079	385,458	439,002,235	0.97
L4c	807,407	618,335	403,201	503,650,627	0.88
L5a	666,287	340,436	160,698	180,577,454	0.89
L5b	652,149	352,682	165,723	144,150,087	1.15
L5c	736,951	520,850	251,977	223,238,275	1.13
L6a	581,773	294,736	109,405	115,435,304	0.95
L6b	644,421	567,275	330,736	306,448,666	1.08
L6c	638,770	579,232	341,869	348,094,277	0.98
L7a	736,881	550,299	300,174	305,785,110	0.98
L7b	698,647	379,941	185,444	161,035,610	1.15
L7c	730,143	504,513	275,118	252,564,184	1.09
BvSW1	1,053,237	417,544	241,641	372,524,318	0.65
BvSW2	1,071,513	269,338	103,333	144,219,590	0.72
BvSW3	1,086,121	525,262	299,713	369,633,525	0.81
Nset1	643,308	79,232	25,217	144,546,998	0.17
Nset2	667,797	519,815	9,929	4,717,330	2.10
Nset3	773,183	804,627	454,052	320,395,210	1.42
RP1	885,734	510,427	154,899	167,716,001	0.92
RP2	842,442	522,599	276,752	208,702,070	1.33
SM1	551,149	69,199	11,106	9,379,558	1.18
SM2	551,380	17,275	2,030	744,899	2.73
SM3	551,543	44,784	6,921	6,868,381	1.01

ISSN: 1471-2164