Table 4 Number of SNPs detected
From: Whole genome SNP discovery and analysis of genetic diversity in Turkey (Meleagris gallopavo)
Variants | Reference total1 | Segregating Total2 |
|---|---|---|
Nonsynonymous | 23,795 | 20,463 |
Synonymous | 52,506 | 47,281 |
Stopgain | 377 | 295 |
Stoplost | 8 | 7 |
Exonic splice site | 1,437 | 1,256 |
Exonic | 75,254 | 66,795 |
Splice acceptor or donor site (interonic) | 734 | 607 |
5'UTR/3'UTR | 8,933 | 7,661 |
Upstream/downstream | 142,829 | 124,005 |
Intronic | 1,749,427 | 1,518,783 |
Intergenic | 3,514,102 | 3,044,243 |
ncRNA | 1,044 | 916 |
Total | 5,493,760 | 4,764,266 |