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Table 4 Number of SNPs detected

From: Whole genome SNP discovery and analysis of genetic diversity in Turkey (Meleagris gallopavo)

Variants Reference total1 Segregating Total2
Nonsynonymous 23,795 20,463
Synonymous 52,506 47,281
Stopgain 377 295
Stoplost 8 7
Exonic splice site 1,437 1,256
Exonic 75,254 66,795
Splice acceptor or donor site (interonic) 734 607
5'UTR/3'UTR 8,933 7,661
Upstream/downstream 142,829 124,005
Intronic 1,749,427 1,518,783
Intergenic 3,514,102 3,044,243
ncRNA 1,044 916
Total 5,493,760 4,764,266
  1. 1 SNPs detected compared to the reference genome in which the non-reference allele is detected in at least one of the 29 individuals. 2 Detected segregating SNPs within all turkey individuals.