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Table 5 Comparisons between full-length cDNA transcripts and assembled transcripts

From: Optimizing de novo common wheat transcriptome assembly using short-read RNA-Seq data

6,137 fl-cDNA transcripts Trinity Trans-ABySS
  AFSFASSS AFSF + ASSS AF + SF + AS + SS AFSFASSS AFSF + ASSS AF + SF + AS + SS
% of fl-cDNA hit 92.94% 92.83% 92.62% 91.33% 90.39% 89.69%
(% of bases covered) 82.84% 82.64% 81.68% 79.52% 76.71% 74.09%
% of fl-cDNA hit with at least 90% of its length 92.06% 92.05% 92.13% 90.83% 89.73% 88.90%
(% of bases covered) 82.08% 82.02% 81.14% 79.24% 76.40% 73.79%