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Table 7 Comparisons between public ESTs and assembled transcripts

From: Optimizing de novo common wheat transcriptome assembly using short-read RNA-Seq data

  Trinity Trans-ABySS
  AFSFASSS AFSF + ASSS AF + SF + AS + SS AFSFASSS AFSF + ASSS AF + SF + AS + SS
% of ESTs hita 87.83% 88.89% 88.86% 88.64% 87.91% 87.29%
(% of bases covered) 77.76% 79.76% 80.04% 80.49% 79.50% 78.61%
% of assembled transcripts hitb 59.54% 65.43% 69.82% 78.05% 80.58% 80.78%
(% of bases covered) 57.09% 62.59% 66.09% 70.91% 74.24% 75.90%
  1. a Proportion of public ESTs matched by assembled transcripts.
  2. b Proportion of assembled transcripts matched by public ESTs.