Table 7 Comparisons between public ESTs and assembled transcripts
From: Optimizing de novo common wheat transcriptome assembly using short-read RNA-Seq data
| Â | Trinity | Trans-ABySS | ||||
|---|---|---|---|---|---|---|
|  | AFSFASSS | AFSF + ASSS | AF + SF + AS + SS | AFSFASSS | AFSF + ASSS | AF + SF + AS + SS |
% of ESTs hita | 87.83% | 88.89% | 88.86% | 88.64% | 87.91% | 87.29% |
(% of bases covered) | 77.76% | 79.76% | 80.04% | 80.49% | 79.50% | 78.61% |
% of assembled transcripts hitb | 59.54% | 65.43% | 69.82% | 78.05% | 80.58% | 80.78% |
(% of bases covered) | 57.09% | 62.59% | 66.09% | 70.91% | 74.24% | 75.90% |