From: Genomic variation in the vomeronasal receptor gene repertoires of inbred mice
DNA sequence | SNPs | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Strain | VRs after parsing | Resolved sequence (in Kb) | Unresolved sequence % | All SNPs | Non-synonymous SNPs (%) | Private SNPs (%) | Truncating | ||||
C57BL/6NJ | 203 | 316.936 | 215.204 | (40.4) | 1 | 1 | (100) | 1 | (100) | 0 | (0.00) |
129S1/SvImJ | 200 | 314.377 | 217.763 | (40.9) | 418 | 238 | (56.9) | 3 | (0.72) | 2 | (0.84) |
129S5SvEvBrd | 201 | 312.532 | 219.608 | (41.3) | 396 | 224 | (56.6) | 1 | (0.25) | 2 | (0.89) |
129P2/Ola | 202 | 315.127 | 217.013 | (40.8) | 416 | 231 | (55.5) | 24 | (5.77) | 4 | (1.73) |
A/J | 200 | 307.621 | 224.519 | (42.2) | 318 | 191 | (60.1) | 36 | (11.3) | 4 | (2.09) |
AKR/J | 200 | 309.55 | 222.59 | (41.8) | 311 | 170 | (54.7) | 7 | (2.25) | 4 | (2.35) |
BALB/cJ | 202 | 315.94 | 216.2 | (40.6) | 301 | 184 | (61.1) | 1 | (0.33) | 4 | (2.17) |
C3H/HeJ | 202 | 314.41 | 217.73 | (40.9) | 216 | 122 | (56.5) | 0 | (0.00) | 2 | (1.64) |
CBA/J | 203 | 316.936 | 215.204 | (40.4) | 249 | 144 | (57.8) | 3 | (1.20) | 2 | (1.39) |
DBA/2J | 201 | 311.824 | 220.316 | (41.4) | 370 | 216 | (58.4) | 22 | (5.95) | 2 | (0.93) |
LP/J | 202 | 314.371 | 217.769 | (40.9) | 521 | 289 | (55.5) | 11 | (2.11) | 3 | (1.04) |
NOD/ShiLtJ | 200 | 314.167 | 217.973 | (41.0) | 333 | 187 | (56.2) | 11 | (3.30) | 2 | (1.07) |
NZO/HILtJ | 199 | 313.186 | 218.954 | (41.2) | 565 | 333 | (58.9) | 36 | (6.37) | 7 | (2.10) |
Lab-derived | 2615 | 4076.977 | 2840.843 | (41.1) | 4415 | 2530 | (57.3) | 156 | (3.53) | 38 | (1.50) |
PWK/PhJ | 194 | 298.987 | 233.153 | (43.8) | 1409 | 789 | (56.0) | 508 | (36.0) | 6 | (0.76) |
CAST/EiJ | 183 | 280.912 | 251.228 | (47.2) | 1402 | 808 | (57.6) | 571 | (40.7) | 8 | (0.99) |
WSB/EiJ | 202 | 314.389 | 217.751 | (40.9) | 462 | 291 | (63.0) | 84 | (18.2) | 4 | (1.37) |
SPRET/EiJ | 172 | 265.669 | 266.471 | (50.1) | 3519 | 1976 | (56.2) | 2619 | (74.4) | 20 | (1.01) |
Wild-derived | 751 | 1159.957 | 968.603 | (45.5) | 6792 | 3864 | (56.9) | 3782 | (55.7) | 38 | (0.98) |
Total | 3,366 | 5,236.93 | 3,809.45 | (42.1) | 11,207 | 6,394 | (57.1) | 3,938 | (35.2) | 76 | (1.19) |