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Table 1 Variation in vomeronasal receptor genes identified by massively parallel sequencing

From: Genomic variation in the vomeronasal receptor gene repertoires of inbred mice

  

DNA sequence

SNPs

Strain

VRs after parsing

Resolved sequence (in Kb)

Unresolved sequence %

All SNPs

Non-synonymous SNPs (%)

Private SNPs (%)

Truncating

C57BL/6NJ

203

316.936

215.204

(40.4)

1

1

(100)

1

(100)

0

(0.00)

129S1/SvImJ

200

314.377

217.763

(40.9)

418

238

(56.9)

3

(0.72)

2

(0.84)

129S5SvEvBrd

201

312.532

219.608

(41.3)

396

224

(56.6)

1

(0.25)

2

(0.89)

129P2/Ola

202

315.127

217.013

(40.8)

416

231

(55.5)

24

(5.77)

4

(1.73)

A/J

200

307.621

224.519

(42.2)

318

191

(60.1)

36

(11.3)

4

(2.09)

AKR/J

200

309.55

222.59

(41.8)

311

170

(54.7)

7

(2.25)

4

(2.35)

BALB/cJ

202

315.94

216.2

(40.6)

301

184

(61.1)

1

(0.33)

4

(2.17)

C3H/HeJ

202

314.41

217.73

(40.9)

216

122

(56.5)

0

(0.00)

2

(1.64)

CBA/J

203

316.936

215.204

(40.4)

249

144

(57.8)

3

(1.20)

2

(1.39)

DBA/2J

201

311.824

220.316

(41.4)

370

216

(58.4)

22

(5.95)

2

(0.93)

LP/J

202

314.371

217.769

(40.9)

521

289

(55.5)

11

(2.11)

3

(1.04)

NOD/ShiLtJ

200

314.167

217.973

(41.0)

333

187

(56.2)

11

(3.30)

2

(1.07)

NZO/HILtJ

199

313.186

218.954

(41.2)

565

333

(58.9)

36

(6.37)

7

(2.10)

Lab-derived

2615

4076.977

2840.843

(41.1)

4415

2530

(57.3)

156

(3.53)

38

(1.50)

PWK/PhJ

194

298.987

233.153

(43.8)

1409

789

(56.0)

508

(36.0)

6

(0.76)

CAST/EiJ

183

280.912

251.228

(47.2)

1402

808

(57.6)

571

(40.7)

8

(0.99)

WSB/EiJ

202

314.389

217.751

(40.9)

462

291

(63.0)

84

(18.2)

4

(1.37)

SPRET/EiJ

172

265.669

266.471

(50.1)

3519

1976

(56.2)

2619

(74.4)

20

(1.01)

Wild-derived

751

1159.957

968.603

(45.5)

6792

3864

(56.9)

3782

(55.7)

38

(0.98)

Total

3,366

5,236.93

3,809.45

(42.1)

11,207

6,394

(57.1)

3,938

(35.2)

76

(1.19)