Optimizing the GATA-3 position weight matrix to improve the identification of novel binding sites

BMC Genomics

Table 3 Motifs discovered by di-nucleotide PWM from -7 to 0 [TSS]

New sites found in human promoter sequences by new PWMs and Match. The sites selected with highest score by the di-nucleotide PWM are shown. The column Motif shows the sites picked up from the human promoters in EPD database and the column Score shows the score given to these sites. The column Match shows the sites found by the Match program with the threshold provided in TRANSFAC as a minimum FN, minimum SUM and minimum FP level in the same database EPD.

ISSN: 1471-2164