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Table 2 Conserved miRNAs in B. napus

From: Identification of miRNAs and their targets from Brassica napus by high-throughput sequencing and degradome analysis

miRNA

miR sequence (5'→3')

miR length (nt)

Reads

Precursor from EST

Mature miRNA position

Stem-loop position

 

miR start

miR end

Precursor start

Precursor end

Bna--miR159*

GGGCTCCTTATAGTTCAAACG

21

79

EX039355

189

209

186

368

Bna--miR159b

TTTGGATTGAAGGGAGCTCTT

21

66

EV097138

224

244

216

408

Bna-miR160a

TGCCTGGCTCCCTGTATGCCA

21

4447

ES904429

153

173

149

237

Bna-miR160a*

GCGTACAGAGTAGTCAAGCATA

22

7

ES904429

214

235

149

237

Bna-miR161*

GCAAGTCGACTTTGGCTCTG

20

97

BZ512955

431

451

329

463

Bna-miR162a

TCGATAAACCTCTGCATCCAG

21

193

DY025212

495

515

420

523

Bna-miR162b

TCGATAAACCTCTGCATCCAG

21

EV208491

295

315

204

329

Bna-miR162b*

GGAGGCAGCGGTTCATCGATC

21

32

EV208491

222

242

212

323

Bna-miR165a

TCGGACCAGGCTTCATCCCCC

21

2205

FP063045

53

73

34

160

Bna--miR166a*

GGAATGTTGTTTGGCTCGAAG

21

29

DX911364

806

826

697

831

Bna-miR166e

GGAATGTTGTCTGGCTCGAGG

21

328

CU967744

48

68

39

185

Bna-miR167d

TGAAGCTGCCAGCATGATCTA

21

6110

CT022223

721

741

635

758

Bna-miR167e

TGAAGCTGCCAGCATGATCTA

21

AC189327

249

269

153

286

Bna-miR167e*

GATCATGTTCGTAGTTTCACC

21

47

AC189327

169

189

153

286

Bna-miR167f

TGAAGCTGCCAGCATGATCTT

21

160

ES910254

45

65

43

134

Bna-miR168b

TTCGCTTGGTGCAGGTCGGGA

21

14

DU984956

357

377

258

396

Bna-miR169n

GCAAGTTGACTTTGGCTCTGT

21

1463

CU944678

404

424

354

528

Bna-miR169n*

TGAGCCAAAGATGACTTGCCG

21

11

CU944678

459

479

356

530

Bna-miR171a*

AGATATTAGTGCGGTTCAATC

21

7

DX044654

128

148

119

219

    

DU980843

223

243

159

246

Bna--miR171f*

TATTGGCCTGGTTCACTCAGA

21

34

DU106747

666

686

647

756

Bna-miR172a

GGAATCTTGATGATGCTGCAT

21

95

EV092015

731

751

637

769

Bna-miR172a*

GTGGCATCATCAAGATTCACA

21

3

EV092015

654

674

629

777

Bna-miR172b

AGAATCTTGATGATGCTGCAT

21

223

CU946172

157

177

69

189

Bna-miR319a

GAGCTTTCTTCGGTCCACTC

20

105

ES908144

308

327

301

477

Bna-miR319b-1

ATCTGCCGACTCATCCATCCA

21

11

CN829704

153

173

76

312

Bna-miR319b-2

GAGATTCTTTCAGTCCAGTCA

21

3

CN829704

103

123

74

310

Bna-miR390d

AAGCTCAGGAGGGATAGCGCC

21

1157

EE544982

541

561

471

581

Bna-miR390d*

CGCTGTCCATCCTGAGTTTCA

21

348

EE544982

441

461

421

531

Bna -miR393*

ATCATGCGATCTCTTCGGATT

21

30

DU101699

224

242

116

242

Bna-miR396

AATAAAGCTGTGGGAAGATAC

21

24

DU106522

54

74

35

216

Bna-miR398

TGTGTTCTCAGGTCACCCCTG

21

66

EE426846

89

109

1

123

Bna-miR399d

TGCCAAAGGAGATTTGCCCGG

21

71

CX190537

106

126

9

146

Bna-miR399f

TGCCAAAGGAGAGTTGCCCTG

21

62

EE556998

584

604

475

635

Bna-miR400

TATGAGAGTATTATAAGTCAC

21

25

CX189066

239

259

212

346

Bna-miR408a

ACAGGGAACAAGCAGAGCATG

21

305

ES903146

59

79

49

157

Bna-miR408a*

ATGCACTGCCTCTTCCCTGGC

21

141

ES903146

128

148

49

157

Bna -miR2111c

TAATCTGCATCCTGAGGTTTA

21

35

BH986382

394

414

375

493

    

DX056967

280

300

176

326