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Table 5 Targets of candidate novel B. napus miRNAs

From: Identification of miRNAs and their targets from Brassica napus by high-throughput sequencing and degradome analysis

miRNA Target EST Category Cleavage site Reads mapping to the expected cleavage site Percentage of expected reads to total reads mapped to the full length of EST (%) Target site location Target annotation
Bna-miRC2 EV142354 1 347 6 30 ORF A. lyrata PPR-containing protein
Bna-miRC5-2 EV077017 0 326 4 50 ORF A. lyrata exostosin family protein
Bna-miRC5-5Bna-miRC8 EV154449 FG574835 2 4 296 119 3 2 27 20 ORF 5UTR A. thaliana alpha-tubulin 6
A. thaliana uncharacterized protein
Bna-miRC9 EV006535 0 256 2 50 ORF A. thaliana auxin response factor 17
Bna-miRC13 EV022057 1 105 3 30 ORF A. thaliana protein PIR
Bna-miRC15-1 EV191962 0 132 5 50 5UTR A. thaliana ferrochelatase 1
Bna-miRC15-2 EV054423 2 615 3 33 ORF A. lyrata ferrochelatase 1
Bna-miRC16 GR445128 3 416 4 27 ORF B.juncea chlorophyll a/b-binding protein
Bna-miRC17a-1 CD818234 1 647 5 36 ORF A. thaliana cinnamyl alcohol dehydrogenase
Bna-miRC18 GT074945 2 341 12 30 ORF B.napus GF14 omega
Bna-miRC20-1 GR442870 0 578 3 50 ORF A. thaliana histone H2B-like protein
  ES987065 0 39 3 50 ORF B.rapa photosystem II center W-like protein
Bna-miRC21 GT079646 2 65 3 33 5UTR A. thaliana photosystem I subunit XI
Bna-miRC22a-1 EV044066 3 505 4 27 ORF A. thaliana OST3/OST6 family protein
Bna-miRC26 EV077764 0 593 5 50 ORF A.thaliana uncharacterized protein (AT3G51610)
Bna-miRC30 EV025081 2 329 4 36 ORF Glycosyl hydrolase family protein
  CX189212 3 269 3 27 ORF Glycosyl hydrolase family protein
Bna-miRC47 ES992448 0 517 6 50 ORF A. thaliana prenylcysteine oxidase (FCLY)