Table 2 Identification of pilus biosynthesis, oligopeptide transport, glucuronate metabolism, and lactose metabolism genes
Function Locus tag (Protein) | Annotation | Closest homolog outsideFrancisella locus tag, protein, identity, E-value |
|---|---|---|
Pilus biosynthesis 1 | Â | Â |
Fphi_0006 (582 aa) | Type IV pili secretin component (PilQ) | Csal_0612, 668 aa, 36%, 7e-84 |
Fphi_0007 (196 aa) | Type IV pili lipoprotein (PilP) | Rmet_3269, 179 aa, 37%, 2e-05 |
Fphi_0008 (199 aa) | Type IV pili glycosylation protein (PilO) | Lferr_0885, 217 aa, 24%, 2e-04 |
Fphi_0009 (187 aa) | Type IV pili associated protein (PilN) | Lferr_0888, 197 aa, 26%, 5e-05 |
Fphi_0010 (334 aa) | Type IV pili, pilus assembly protein | None |
Fphi_0117 (592 aa) | Type IV pili ATPase (PilB/PulE) | Shewmr4_0420, 569 aa, 48%, 4e-147 |
Fphi_0118 (410 aa) | Type IV pili polytopic inner membrane protein (PilC/PulF) | Tgr7_0786, 403 aa, 42%, 7e-85 |
Fphi_0157 (194 aa) | Type IV pili, pilus assembly protein (FimT) | Shal_1142, 171 aa, 30%, 6e-11 |
Fphi_0422 (152 aa) | Type IV pili fiber building block protein (PilA/PilE) | Noc_2540, 147 aa, 35%, 7e-15 |
Fphi_0423 (145 aa) | Type IV pili, pilus assembly protein (PilA/PilE) | CV_4209, 155 aa, 33%, 5e-12 |
Fphi_0424 (409 aa) | Type IV pili, pilus assembly protein (PilA/PilE) | NMB0018, 170 aa, 30%, 3e-09 |
Fphi_0449 (313 aa) | Type IV pili, pilus assembly protein (PilA/PilE) | CtCNB1_4760, 144 aa, 28%, 3e-05 |
Fphi_0522 (304 aa) | Type IV pilus assembly protein PilW | None |
Fphi_0763 (149 aa) | Type IV pili, pilus assembly protein | Tola_2518, 128 aa, 36%, 2e-15 |
Fphi_0996 (342 aa) | Twitching motility protein (PilT) | SO_3351, 345 aa, 58%, 4e-106 |
Fphi_1136 (337 aa) | Type IV pilus assembly protein (PilW) | None |
Fphi_1587 (282 aa) | Type IV pili leader peptidase and methylase (PilD) | Maqu_2683, 291 aa, 41%, 9e-55 |
Fphi_1689 (297 aa) | Type IV pilus biogenesis/stability protein (PilW) | Kkor_1840, 263 aa, 30%, 1e-09 |
Fphi_1748 (111 aa) | Type IV pilin (PilA) | Hsero_0660, 168 aa, 28%, 3e-06 |
Oligopeptide transport 2 | Â | Â |
Fphi_1024 (558 aa) | ABC-type oligopeptide transport system, periplasmic component (OppA) | Rahaq_2640, 546 aa, 38%, 1e-90 |
Fphi_1025 (312 aa) | Oligopeptide ABC transporter inner membrane protein (OppB) | EAMY_1936, 306 aa, 47%, 3e-77 |
Fphi_1026 (286 aa) | Oligopeptide transport system permease protein (OppC) | VP2089, 300 aa, 53%, 2e-84 |
Fphi_1027 (219 aa) | Oligopeptide transport system permease protein (OppD) | CV_4326, 333 aa, 61%, 3e-137 |
Fphi_1029 (324 aa) | Oligopeptide transport ATP-binding protein (OppF) | NT05HA_1387, 332 aa, 58%, 5e-105 |
Glucuronate metabolism 3 | Â | Â |
F7308_1388 (520 aa) | Rhamnogalacturonide transporter (RhiT) | KPK_1307, 502 aa, 44%, 2e-116 |
F7308_1389 (776 aa) | Alpha-glucosidase | BL00280, 802 aa, 50%, 0.0 |
F7308_1390 (490 aa) | D-mannonate oxidoreductase (UxuB) | CJA_0180, 492 aa, 42%, 3e-105 |
F7308_1391 (396 aa) | Mannonate dehydratase (UxuA) | PROSTU_04181, 396 aa, 59%, 5e-135 |
F7308_1392 (321 aa) | 2-keto-3-deoxygluconate kinase (KdgK) | Sde_1269, 296 aa, 43%, 9e-59 |
F7308_1393 (182 aa) | KDPG Aldolase (KdgA) | BC1003_2949, 213 aa, 37%, 4e-34 |
F7308_1394 (471 aa) | Glucuronate isomerase (UxaC) | Sde_1272, 471 aa, 51%, 3e-140 |
F7308_1395 (463 aa) | D-xylose-proton symporter (XylT) | CBUD_1731, 463 aa, 43%, 3e-91 |
F7308_1396 (325 aa) | Inositol oxygenase | 56727 Miox, 285 aa, 37%, 3e-47 |
Lactose metabolism 4 | Â | Â |
Fphi_0309 (655 aa) | Beta-galactosidase | BMD_1886, 651 aa, 42%, 2e-159 |
Fphi_0310 (394 aa) | Sugar transport protein | ZP_07631419, 394 aa, 31%, 2e-44 |