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Table 3 Frequency of repeat motifs (group) in all analyzed virus genomes

From: Coevolution between simple sequence repeats (SSRs) and virus genome size

Repeat motif (group)

Frequency

Percentage (%)

Mono-

19534

37.36

A

8564

16.38

C

1434

2.74

G

1408

2.69

T

8128

15.54

Di-

25452

48.68

AC/CA

3358

6.42

AG/GA

3124

5.97

AT/TA

9029

17.27

CG/GC

4094

7.83

CT/TC

2664

5.09

GT/GT

3183

6.09

Tri-

6855

13.11

AAT/ATA/ATT/TAA/TAT/TTA

1447

2.77

AAC/ACA/CAA/GTT/TGT/TTG

666

1.27

AAG/AGA/CTT/GAA/TCT/TTC

910

1.74

ACC/CAC/CCA/GGT/GTG/TGG

613

1.17

ACG/CGA/CGT/GAC/GTC/TCG

479

0.92

AGT/ACT/CTA/GTA/TAC/TAG

228

0.44

AGC/CAG/CTG/GCA/GCT/TGC

540

1.03

AGG/CCT/CTC/GAG/GGA/TCC

538

1.03

ATG/ATC/CAT/GAT/TCA/TGA

736

1.41

GGC/CCG/CGC/CGG/GCC/GCG

698

1.33

Tetra-

274

0.52

Penta-

48

0.09

Hexa-

125

0.24

Total

52288

100.00