From: Reconstructing differentially co-expressed gene modules and regulatory networks of soybean cells
Correlation coefficient | Most enriched biological process* | TF | Gene | Coherence†| I$ | M& | L# |
---|---|---|---|---|---|---|---|
0.989913 | lipid transport | 7 | 62 | 6 | Ce | √ | √[27] |
0.945372 | positive regulation of release of sequestered calcium ion into cytosol | 7 | 11 | 36 |  |  | √[36] |
0.930583 | vegetative to reproductive phase transition of meristem | 8 | 161 | 3 | Ce | √ | |
0.926575 | proteolysis | 8 | 27 | 18 | E | √ | √[39] |
0.910277 | steroid biosynthetic process | 7 | 81 | 3 |  | √ | √[40] |
0.902439 | photosynthesis | 9 | 114 | 12 | T |  | √[41] |
0.898638 | protein transport | 9 | 183 | 8 | Ce | √ |  |
0.896121 | regulation of cell shape | 8 | 50 | 6 | E&H | Â | Â |
0.893346 | ATP-dependent chromatin remodeling | 6 | 163 | 1 | E | √ |  |
0.890829 | photosynthesis, light harvesting | 11 | 102 | 12 |  | √ | √[41] |
0.888479 | mRNA processing | 9 | 218 | 7 | Ce | √ |  |
0.882899 | translational elongation | 9 | 85 | 4 | E | √ |  |
0.880672 | regulation of flower development | 9 | 57 | 7 | Ce | √ | √[42] |
0.867582 | lipid transport | 7 | 63 | 6 | Ce | √ |  |
0.862264 | skeletal system morphogenesis | 9 | 70 | 4 | T | √ |  |
0.857502 | translation | 11 | 125 | 12 | Ce | Â | Â |
0.855305 | carotenoid biosynthetic process | 9 | 103 | 3 | Ce | √ |  |
0.852366 | lactate metabolic process | 7 | 84 | 4 | E,T&H | √ |  |
0.843827 | establishment or maintenance of polarity of embryonic epithelium | 5 | 99 | 6 | E | √ |  |
0.841523 | flavonoid biosynthetic process | 8 | 44 | 6 | E | √ | √[29] |
0.836985 | base-excision repair | 10 | 36 | 8 | E | Â | Â |
0.830088 | flavonoid biosynthetic process | 9 | 38 | 15 | E&T | √ | √[29] |
0.826087 | acetyl-CoA biosynthetic process | 7 | 158 | 3 | E |  | √[43] |
0.824363 | auxin mediated signaling pathway | 12 | 76 | 5 | E | √ | √[44] |
0.820377 | carbohydrate metabolic process | 9 | 71 | 11 | T |  | √[45] |
0.817311 | transcription | 9 | 56 | 25 | E | √ |  |
0.81347 | superoxide metabolic process | 10 | 46 | 6 | T | Â | Â |
0.812358 | nodulation | 10 | 73 | 4 | E | √ | √[28] |
0.809849 | PSII associated light-harvesting complex II catabolic process | 8 | 108 | 2 | E&Ce | √ | √[45] |
0.808305 | metabolic process | 7 | 44 | 13 | T | √ |  |
0.806202 | secondary cell wall biogenesis | 8 | 97 | 6 | E | √ | √[46] |
0.804089 | DNA replication initiation | 10 | 96 | 4 | Ce | √ |  |