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Table 2 Candidate genes for immune function, sex differentiation and temperature-response found in our dataset

From: De novo sequence assembly and characterisation of a partial transcriptome for an evolutionarily distinct reptile, the tuatara (Sphenodon punctatus)

Gene

Transcript ID

Transcript length

Match length

Match identity

Match accession

Immune genes

 MHC class I

29_Locus_17662

136

136

96%

DQ145788

 

29_Locus_8295

526

444

91%

ABA42599

 

21_Locus_8663

1455

717

90%

ABA42599

 

25_Locus_8701

642

567

88%

ABA42600

 

33_Locus_20320

141

138

86%

ABA42600

 

25_Locus_21578

159

105

62%

ABA42599

 

21_Locus_10540

222

216

50%

ABB92561

 MHC class II β chain

21_Locus_1538

921

420

99%

DQ124231

 

29_Locus_1474

231

231

94%

DQ124232

 MHC class II α chain

21_Locus_7902

232

222

74%

AF256650

 

29_Locus_2120

133

111

92%

AF256650

 MHC class II DM α chain

21_Locus_1203

963

648

43%

AEC52935

 

21_Locus_6166

155

144

60%

ACY01474

 Toll-like receptor 2

21_Locus_29589

125

123

98%

ABU95017

Putative sex-differentiation genes

 Sox8

25_Locus_11477

766

222

97%

AAO39011

 

25_Locus_1895

162

162

93%

ABB02374

 

21_Locus_14808

309

252

79%

AAO49746

 Sox 9

21_Locus_21814

173

173

100%

AY168558

 

21_Locus_18139

167

165

98%

ACU12331

 

21_Locus_24105

142

67

100%

AY168558

 Dax1

21_Locus_20366

134

117

92%

ABQ88373

Temperature-responsive genes

 CIRBP

37_Locus_775

500

252

82%

XP_003224509

 HSP27

21_Locus_6322

1028

543

82%

XP_002190077

 

33_Locus_379

827

606

75%

XP_002194703

 HSP40 (DnaJ)

21_Locus_336

1887

1233

97%

NP_001005841

 

21_Locus_2214

2001

1014

83%

XP_003217107

 HSP47

25_Locus_2437

1689

1212

90%

BAF94140

 HSP70

21_Locus_6649

1124

1113

96.5%

AEO13403

 

25_Locus_13016

548

429

92%

EAY98319

 

21_Locus_13133

369

369

90%

ADD69959

 

21_Locus_4641

3563

2406

90%

XP_003210546

 

25_Locus_21367

271

270

89%

XP_002193237

 HSP70BP

25_Locus_4659

1484

693

81%

NP_001025928

 

25_Locus_5331

1431

696

84%

XP_003226240

 HSP75

21_Locus_7217

2174

1566

90%

BAF94145

 HSP90

33_Locus_89

2694

1230 + 372

98%

AF275719

 

21_Locus_16233

979

975

90%

BAD95027

 

21_Locus_31051

139

138

96%

AAD11550

  1. The accession number for the top BLAST hit is given. Not all matches for heat-shock proteins are shown. CIRBP = Cold-inducible RNA binding protein.