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Table 2 Intestine transcripts corresponding to the top 100 most significant features exhibiting differential expression between family groups

From: Effects of genotype and dietary fish oil replacement with vegetable oil on the intestinal transcriptome and proteome of Atlantic salmon (Salmo salar)

Accession no Gene Lean/Fat p- value
   FO VO  
Metabolism (21%)
Lipid metabolism (5%)
CK874747 Acylglycerol kinase - 1.0 - 1.1 0.0003
BI468033 ATP-binding cassette sub-family A member 1 - 1.1 - 1.6 0.0004
Energy metabolism/generation of precursor metabolites (2%)
CK890974 Mitochondrial calcium-dependent solute carrier SCaMC-2 - 1.1 - 1.6 0.0000
Protein and amino acid metabolism (12%)
EG647485 Proteasome subunit beta type-8 precursor - 1.3 - 1.8 0.0000
DW591059 Heat shock protein Hsp-16 1.2 1.4 0.0001
AJ425553 26S proteasome non-ATPase regulatory subunit 9 - 1.2 - 1.1 0.0002
DW592187 26 proteasome complex subunit DSS1 1.5 1.3 0.0008
CK878109 Heat shock protein 60 kDa 1.2 1.4 0.0009
Xenobiotic and oxidant metabolism (2%)
CO472279 Cytochrome P450 1A - 1.2 - 1.5 0.0003
Transport/ intracellular trafficking (5%)
CK886307 Peptide transporter PEPT2 - 1.4 - 1.3 0.0006
DW588251 Post-GPI attachment to proteins factor 2 1.1 1.3 0.0007
Regulation of transcription (21%)
CK877881 Forkhead box Q1 - 1.4 - 1.7 0.0000
CK884548 Proline-rich nuclear receptor coactivator 2 - 1.1 - 1.2 0.0001
CK885013 Forkhead box protein F1 1.1 1.5 0.0003
CK891975 Y-box binding protein-2 - 1.1 - 1.1 0.0003
DW589341 Signal transducer/activator of transcription Stat1 - 1.2 - 1.2 0.0004
CN181282 Bromodomain containing protein 3 - 1.1 - 1.1 0.0007
CK884407 C-Myc-binding protein - 1.3 - 1.1 0.0007
CK895950 Transcription factor CP2-like - 1.5 - 1.2 0.0007
EG648473 BTB/POZ domain-containing protein - 1.1 - 1.4 0.0009
Translation (7%)
CN181322 40S ribosomal protein S4 1.1 1.1 0.0002
CK885979 Ribonuclease UK114 - 1.1 - 1.3 0.0005
EG648042 Eukaryotic translation initiation factor 3, subunit J 1.1 1.1 0.0009
Signalling/Signal transduction (16%)
CO471793 Rho GDP-dissociation inhibitor 1 1.3 1.0 0.0000
CK885560 Protein tyrosine phosphatase non-receptor type 9 1.3 1.5 0.0004
CK885079 Sonic hedgehog-like protein - 1.3 - 1.0 0.0004
EG648038 Kalirin, RhoGEF kinase 1.2 1.2 0.0005
DW589610 Chimaerin 1 1.2 1.2 0.0005
CK897590 Growth factor receptor-bound protein 2 1.1 1.1 0.0009
EG647545 Protein tyrosine phosphatase receptor type D 1.0 1.2 0.0009
Structural proteins (25%)
CK882401 Troponin C - 1.1 - 1.2 0.0000
CK889952 Transgelin 2 1.5 1.7 0.0000
EG648135 Osteonectin 1.3 1.5 0.0000
CK899058 Collagen alpha 3 type VI 1.5 1.5 0.0002
CK879405 Collagen alpha 2 type VI 1.3 1.5 0.0002
EG649361 Collagen alpha 2 type I 1.5 1.7 0.0005
EG649013 Collagen alpha 3 type I 1.4 1.5 0.0005
mus_mfo_15A10 Troponin-I isoform 3 1.4 1.6 0.0007
CK876833 Keratocan - 1.0 1.6 0.0007
DW590534 Collagen alpha 2 type I 1.5 1.6 0.0010
CK892271 Collagen alpha 2 type V 1.2 1.4 0.00010
CK873441 Collagen alpha1 type VI 1.2 1.4 0.0010
Immune response (5%)
AJ425527 T-cell immunoglobulin and mucin domain-containing protein 4 1.1 1.1 0.0001
EG649194 Mannose-binding protein C 1.4 1.4 0.0003
Miscellaneous
AM041770 Preimplantation protein 3 - 1.3 - 1.2 0.0000
EG649106 Ornithine decarboxylase antizyme 2 1.4 1.1 0.0002
CK884355 Guanylin precursor 1.2 1.4 0.0002
CK879185 Aminolevulinate, delta-, synthetase 1 - 2.0 - 1.1 0.0002
CK885814 Similar to p53-associated parkin-like cytoplasmic protein 1.2 1.1 0.0002
CK886214 Septin-7 1.1 1.1 0.0003
BM414079 Tumor protein D52-like 2 - 1.1 - 1.3 0.0003
BM413818 Splicing factor, proline- and glutamine-rich 1.2 1.2 0.0003
CK874550 Follistatin-related protein 1 1.1 1.3 0.0004
DW589104 Nucleoside diphosphate kinase 6 1.1 1.1 0.0005
DW592207 Deoxyhypusine synthase 1.5 1.6 0.0007
CK892359 HCLS1-associated protein X-1 - 1.2 - 1.1 0.0007
BI468158 Nuclear protein 1 - 1.0 - 1.6 0.0009
AJ425003 Lamina-associated polypeptide 2 1.2 1.1 0.0010
CK899283 Small EDRK-rich factor 2 1.3 1.5 0.0010
CK885090 Claudin 15 - 1.2 - 1.1 0.0011
  1. Annotated features (60% of all clones) are arranged by categories of biological function (with percentages of distribution of genes within each category being indicated) and, within these, by decreasing significance (assessed by two-way ANOVA). Also indicated are the GenBank accession numbers for each clone (or, when not available, the probe number) and the expression ratio between Lean and Fat fish fed either FO or VO.