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Table 2 Distribution of Cluster of Orthologous Genes (COG) categories in B. pilosicoli strains 95/1000, B2904 and WesB a

From: Comparative genomics of Brachyspira pilosicoli strains: genome rearrangements, reductions and correlation of genetic compliment with phenotypic diversity

Function (COG category)

95/1000

%

B2904

%

WesBc

%

Cellular Processes

Translation, ribosomal structure and biogenesis (J)

122

5.22

119

4.45

125

4.83

Transcription (K)

51

2.18

49

1.83

61

2.36

Replication, recombination and repair (L)

51

2.18

56

2.10

61

2.36

Cellular Processes and Signalling

Cell cycle control, cell division and chromosome partitioning (D)

10

0.43

8

0.30

9

0.35

Defence mechanisms (V)

35

1.50

33

1.23

35

1.35

Signal transduction mechanisms (T)

16

0.68

15

0.56

15

0.58

Cell wall, membrane and envelope biogenesis (M)

74

3.17

72

2.69

79

3.05

Cell motility (N)

40

1.71

39

1.46

40

1.54

Intracellular trafficking, secretion and vesicular transport (U)

11

0.47

7

0.26

9

0.35

Posttranslational modification, protein turnover and chaperones (O)

40

1.71

36

1.35

39

1.51

Metabolism

Energy production and conservation (C)

89

3.81

84

3.14

84

3.24

Carbohydrate transport and metabolism (G)

101

4.32

123

4.60

139

5.37

Amino acid transport and metabolism (E)

141

6.03

138

5.16

149

5.76

Nucleotide transport and metabolism (F)

49

2.10

54

2.02

57

2.20

Coenzyme transport and metabolism (H)

47

2.01

44

1.65

48

1.85

Lipid transport and metabolism (I)

41

1.75

33

1.23

34

1.31

Inorganic ion transport and metabolism (P)

53

2.27

53

1.98

49

1.89

Secondary metabolites biosynthesis, transport and catabolism (Q)

9

0.38

10

0.37

9

0.35

Poorly characterised

General function prediction only (R)

149

6.37

147

5.50

157

6.06

Function unknown (S)

72

3.08

76

2.84

77

2.97

Unassigned

Not in COG (X)

1137

48.63

1477

55.26

1313

50.71

TOTAL

2338

100

2673

100

2589

100

  1. aThe number and percentage of the total genes within each of the genomes, assigned to each functional group are shownb.
  2. bThose genes with significant PID and/or query/target coverage hits; significance equals blastx/blastp PID of at least 25% and/or 75% query or target coverage.
  3. c The incomplete WesB strain genome was within one scaffold.