Table 1 Primers and co-ordinates for all PCR amplicons and Probes (hg18, GRCh36)
From: A mechanistic basis for amplification differences between samples and between genome regions
ID | Forward primer sequence | Reverse primer sequence | Co-ordinates (GRCh36) | Length | Type |
|---|---|---|---|---|---|
HDLBP | GAGCTCATCCTCCACTTGGG | GAACTTGGTGAGAAGTGCGG | chr2:241,855,412-241,860,011 | 4600 | TUF |
HDAC4 | AGGTGCTAGATTTGGACGGG | GTGTGTGTTAGGGGGTCAGG | chr2:239,860,758-239,863,570 | 2813 | TUF |
CAPN10 | ATCTGGCTACAGGCATGGGC | GAGAGCCCAGAAGTTCCAGC | chr2:241,173,030-241,175,779 | 2750 | TUF |
PSCDBP | GAGGCAATCACATGAGCAGG | CTGCTAAGTGGATGAATGGTGG | chr2:158,003,567-158,006,035 | 2469 | Non-TUF |
MARCH7 | GGGAAATATGGGTTGGGAAACTG | ATGGTCTCCGTCTTCTTCGG | chr2:160,329,568-160,332,075 | 2508 | Non-TUF |
RBMS1 | AGTAAGGAGATGAGGGGTGG | ACAGGTTTTGGTGGGAGAGG | chr2:160,889,938-160,892,713 | 2776 | Non-TUF |
2n13 | GCAGACTAATGGGGATGAGG | GCCTATCTGGAAAAATAGAC | chr2:241,151,005-241,151,733 | 729 | TUF |
chr13:31,949,825-31,950,179 | 355 | Non-TUF | |||
8n6 | TTGAGTCAGCCACAGAGG | CCTGGTGACAGAATGACC | chr8:142,286,472-142,286,937 | 466 | TUF |
chr6:89,689,978-89,690,367 | 390 | Non-TUF | |||
8n3 | GCTTCATCCAGCTTCAACC | AGCAAAGTGACACTCAGTGC | chr8:145,234,022-145,234,464 | 443 | TUF |
chr3:134,693,119-134,693,550 | 432 | Non-TUF | |||
2n1 | CACCCCAGTGAGTAAGCTGC | AGGGTGATCGCTTCTGACC | chr2:241,707,017-241,707,258 | 242 | TUF |
chr1:37,721,785-37,722,026 | 242 | Non-TUF | |||
5nX | ATCTAGGCTCAGGAGAGAG | TAAACATCTTAAAATGGCCT | chr5:179,593,910-179,594,270 | 361 | TUF |
chrX:63,694,585-63,694,959 | 375 | Non-TUF | |||
9n14 | CAGAGAGCAACCTGGCTC | CTGCCTCCTTGTTTGGC | chr9:139,562,111-139,562,372 | 262 | TUF |
chr14:94,217,995-94,218,256 | 262 | Non-TUF |