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Table 2 Association between PRT performance and Illumina Infinium intensity correlations with C + G and CpG for 54 samples

From: A mechanistic basis for amplification differences between samples and between genome regions

  C + G CpG
Window Correlation Spearman rank Correlation Spearman rank
Size p-value p-value p-value p-value
1 mb 0.7 0.8 0.37 0.59
100 kb 0.04 0.05 0.002 0.007
50 kb 0.04 0.13 0.41 0.4
10 kb 0.36 0.29 0.49 0.28
5 kb 0.39 0.36 0.00085 0.013
1 kb 0.66 0.52 0.033 0.023
500 bp 0.55 0.51 0.016 0.008
100 bp 0.0001 0.0002 0.066 0.028