Table 2 Association between PRT performance and Illumina Infinium intensity correlations with C + G and CpG for 54 samples
From: A mechanistic basis for amplification differences between samples and between genome regions
C + G | CpG | |||
|---|---|---|---|---|
Window | Correlation | Spearman rank | Correlation | Spearman rank |
Size | p-value | p-value | p-value | p-value |
1 mb | 0.7 | 0.8 | 0.37 | 0.59 |
100 kb | 0.04 | 0.05 | 0.002 | 0.007 |
50 kb | 0.04 | 0.13 | 0.41 | 0.4 |
10 kb | 0.36 | 0.29 | 0.49 | 0.28 |
5 kb | 0.39 | 0.36 | 0.00085 | 0.013 |
1 kb | 0.66 | 0.52 | 0.033 | 0.023 |
500 bp | 0.55 | 0.51 | 0.016 | 0.008 |
100 bp | 0.0001 | 0.0002 | 0.066 | 0.028 |