Table 3 The novel miRNAs of the miRDeep2 pipeline
From: Profiling microRNAs in lung tissue from pigs infected with Actinobacillus pleuropneumoniae
Novel miRNA (miRBase name) | Mature sequence | Star sequence | Coordinates/strand | Raw reads in Necrotic | Raw reads in Unaffected | Novoalign | |||
|---|---|---|---|---|---|---|---|---|---|
Mature | Star | Mature | Star | Necrotic | VU | ||||
miR-d1 miR-7142 | uuuguuggcuccucugaaguga | acucuccgaggggccuucaaggg | chr2:6684269–6684379:- | 30 | 1 | 49 | 0 | 15 | 8 |
miR-d2 miR-7138 | gaggacuggccuugcagggugc | ucccagcaaguguccauccaucu | chr2:69969933–69970043:+ |  |  | 21 | 9 | 1 | 4 |
miR-d3 miR-7137 | agcuggucugggaguucccggg | cgggggaacucccagaccagc | chr3:9289209–9289319:+ |  |  | 25 | 8 | 5 | 5 |
miR-d4 miR-7135 | aucugucugugucucugagcag | ucucugagacacugacugugg | chr3-25819302-25819413:+ | 5 | 3 | 72 | 8 | 4 | 14 |
miR-d5 miR-7134 | augcggaaccugcggauacgg | auguccgcggguucccuaucc | chr5:4391270–4391380:- | 8,622 | 32 | 20,234 | 161 | 5413 | 3690 |
miR-d6 miR-7139 | uagggcacaggaugggaugagg | ccauuccuucgucugugcacuag | chr5:97203430–97203540:+ |  |  | 12 | 4 | 2 | 3 |
miR-d7§ miR-2320 | uggcacaggguccagcugucgg | cgaugauggucccuguguuugg | chr6:43886614–43886725:- | 28 | 10 | 224 | 37 | 19 | 32 |
miR-d8 miR-7136 | ucugguccagacacuguggagc | ucucaguguuugaaccagaagc | chr7:8508420–8508531:- |  |  | 23 | 14 | 3 | 7 |
miR-d9 miR-7143 | ucugcacuugaagcugagacuga | aagcucagcucugaagugcagagg | chr9:27778763–27778873:+ |  |  | 11 | 0 | 1 | 2 |
miR-d10 miR-7144 | acuuucccgggauuuggagcgc | gcuccuugucccgagaccgcga | chr11:74962849–74962958:+ |  |  | 10 | 0 | 11 | 2 |
miR-d11 miR-7141 | gacgguuuggacguuaagaac | ucuuaacguccaaaccguucc | chr15:129475498–129475608:+ |  |  | 21 | 0 | 1 | 4 |
miR-d12 miR-7140 | aaugaugccccuuagaguugag | caacucaagggggcaucauuca | chr17:37143888–37143999:+ | 30 | 1 | 11 | 2 | 14 | 2 |