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Table 4 The top 20 miRNAs in either sample, ordered by number of necrotic reads

From: Profiling microRNAs in lung tissue from pigs infected with Actinobacillus pleuropneumoniae

Annotation

Annotation coordinates

Normalized read counts

log2(FC)

p-value

Necrotic

Unaffected

mir-143

chr2:136030751–136030831:+

697353.81

461481.09

−0.60

3.64E-001

mir-21

chr12:34201564–34201656:+

57776.26

122252.79

1.08

1.02E-001

mir-451

chr12:42820765–42820830:-

49029.44

3944.06

−3.64

5.16E-007

mir-30a

chr1:53848997–53849104:-

46416.19

109713.26

1.24

6.12E-002

mir-148a

chr18:45214547–45214615:-

25801.77

26340.33

0.03

9.64E-001

let-7 g

chr13:28999418–28999498:+

23644.76

10926.89

−1.11

9.22E-002

mir-126

chr1:294113068–294113141:+

15131.46

54694.16

1.85

5.98E-003

mir-30e

chr6:121824300–121824380:-

12711.24

15622.78

0.30

6.49E-001

mir-142

chr12:32630402–32630482:-

11700.22

2961.25

−1.98

3.43E-03

miR-d5

chr5:4391269–4391380:-

10960.52

3887.77

−1.50

2.51E-02

miR-223

chrX:51247504–51247526:-

10712.16

367.80

−4.86

2.38E-10

mir-144

chr12:42820909–42820993:-

8968.19

1426.54

−2.65

1.34E-04

mir-10a

chr12:22389423–22389503:-

8433.66

26108.75

1.63

1.50E-02

mir-30d

chr4:5729458–5729537:+

8170.45

10106.35

0.31

6.39E-01

mir-23a

chr2:56861158–56861228:-

5968.90

3586.67

−0.73

2.64E-01

mir-27b

chr10:26148775–26148855:-

5775.87

10319.10

0.84

2.03E-01

mir-191

chr13:26605640–26605720:-

4910.64

3262.54

−0.59

3.69E-01

mir-146b

chr14:118471587–118471686:+

3848.33

4350.12

0.18

7.87E-01

let-7c

chr13:130665020–130665114:+

3605.36

5812.52

0.69

2.94E-01

mir-146a

chr16:60604389–60604467:+

3486.58

635.24

−2.46

3.68E-04

mir-23b

chr10:26149009–26149089:-

2741.48

3640.56

0.41

5.33E-01

mir-1

chr17:64096221–64096329:+

1986.93

3300.20

0.73

2.66E-01

mir-152

chr12:21743214–21743294:+

1764.21

3394.96

0.94

1.53E-01

mir-99b

chr6:39533215–39533285:+

1434.86

3234.90

1.17

7.72E-02

  1. The reads shown in the table are normalized to counts per million calculated by the TMM normalized sample size, the log2 of the fold change (positive for down regulation in the necrotic tissue) and the p-values are determined by the exact-test.
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BMC Genomics

ISSN: 1471-2164

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