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Table 2 cDNAs selected from all 3 forward SHH libraries.
| Gene name | Gene Symbol | E-value | Genebank No. | Number of genes |
|---|---|---|---|---|
| 3 h | 24 | |||
| ATP synthase F0 subunit 6 | ATP6 | 2.00E-173 | XM_002345305 | 1 |
| 28S ribosomal RNA | 1.00E-36 | NR_003287 | 3* | |
| B-cell receptor-associated protein 31 | BCAP31 | 0.00E+00 | NM_005745 | 1 |
| calmodulin 2 | CALM2 | 0.00E+00 | NM_001743 | 1 |
| chromosome 6 open reading frame 125 | SGA-81M | 0.00E+00 | NM_032340 | 1 |
| coiled-coil domain containing 56 | CCDC56 | 0.00E+00 | NM_001040431 | 1 |
| ferritin | FTH1 | 2.00E-30 | NM_002032 | 2* |
| FSHD region gene 1 family, member B | FRG1B | 0.00E+00 | NR_003579 | 1 |
| H2A histone family, member Z | H2AFZ | 8.00E-153 | NM_002106 | 1 |
| H3 histone, family 3A | H3F3A | 1.00E-163 | NM_002107 | 1 |
| lysosomal protein transmembrane 4 alpha | LAPTM4A | 0.00E+00 | NM_014713 | 1 |
| mitochondrial ribosomal protein L42 | MRPL42 | 0.00E+00 | NM_172178 | 1 |
| fascin | FSCN1 | 3.00E-29 | AAH07539 | 1 |
| nerve growth factor receptor | TNFRSF16 | 6.00E-142 | NM_206915 | 1 |
| phosphoserine phosphatase | PSPH | 2.00E-139 | NM_004577 | 1 |
| regulator of G-protein signaling 5 | RGS5 | 0.00E+00 | NM_003617 | 1 |
| small nuclear ribonucleoprotein D3 | SNRPD3 | 0.00E+00 | NM_004175 | 1 |
| superoxide dismutase 1 | SOD1 | 0.00E+00 | NM_000454 | 1 |
| SWI/SNF related, matrix associated, actin dependent regulator of chromatin | SMARCE1 | 0.00E+00 | NM_003079 | 1 |
| ubiquitin C | UBC | 5.00E-39 | NM_021009 | 1 |
| Unknown genes | 1 | |||
| 24 h | 47 | |||
| calcyclin binding protein | CACYBP | 0.00E+00 | NM_014412 | 1 |
| 28S ribosomal RNA | 1.00E-36 | NR_003287 | 2* | |
| calmodulin 2 | CALM2 | 0.00E+00 | NM_001743 | 1 |
| casein kinase 1 | CSNK1A1 | 0.00E+00 | NM_001892 | 1 |
| chromosome 14 open reading frame 147 | SSSPTA | 9.00E-93 | NM_138288 | 1 |
| claudin domain containing 1 | CLDND1 | 0.00E+00 | NM_019895 | 1 |
| early growth response 1 | EGR1 | 0.00E+00 | NM_001964 | 1 |
| ferritin | FTL | 6.00E-161 | NM_000146 | 1 |
| glutamate-ammonia ligase (glutamine synthetase) | GLUL | 0.00E+00 | NM_002065 | 3* |
| glyceraldehyde-3-phosphate dehydrogenase | GAPDH | 0.00E+00 | NM_002046 | 1 |
| GTP binding protein overexpressed in skeletal muscle | GEM | 0.00E+00 | NM_181702 | 2* |
| heat shock 70 kDa protein 8 | HSPA8 | 0.00E+00 | NM_006597 | 1 |
| heat shock protein 90 kDa alpha (cytosolic) | HSP90AA1 | 0.00E+00 | NM_005348 | 1 |
| integrator complex subunit 6 | INTS6 | 0.00E+00 | NM_001039937 | 1 |
| mab-21-like 1 | MAB21L1 | 0.00E+00 | NM_005584 | 1 |
| methionine adenosyltransferase II, beta | MAT2B | 9.00E-153 | NM_182796 | 1 |
| mitochondrial ribosomal protein L42 | MRPL42 | 0.00E+00 | NM_014050 | 1 |
| NADH dehydrogenase (ubiquinone) 1 | NDUFAB1 | 0.00E+00 | NM_005003 | 1 |
| neurofilament, medium polypeptide | NEFM | 0.00E+00 | NM_005382 | 1 |
| nudix-type motif 5 | NUDT5 | 0.00E+00 | NM_014142 | 1 |
| pituitary tumor-transforming 1 | PTTG1 | 0.00E+00 | NM_004219 | 1 |
| polo-like kinase 1 | PLK1 | 5.00E-103 | NM_005030 | 1 |
| ribosomal protein L15 | RPL15 | 0.00E+00 | NM_002948 | 1 |
| ribosomal protein L23a | RPL23A | 0.00E+00 | NM_000984 | 1 |
| RNA binding motif protein 7 | RBM7 | 3.00E-111 | NM_016090 | 1 |
| shisa homolog 2 | SHISA2 | 0.00E+00 | NM_001007538 | 1 |
| cytochrome b | CYTB | 0.00E+00 | XR_078322 | 1 |
| SNF2 histone linker PHD RING helicase | SHPRH | 0.00E+00 | NM_001042683 | 1 |
| TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor | TAF9 | 0.00E+00 | NM_003187 | 1 |
| Tax1 (human T-cell leukemia virus type I) binding protein 1 | TAX1BP1 | 0.00E+00 | NM_006024 | 1 |
| triosephosphate isomerase 1 | TPI1 | 0.00E+00 | NM_000365 | 2* |
| Unknown genes | 11 | |||
| 48 h | 43 | |||
| actin, beta | ACTB | 0.00E+00 | NM_001101 | 3 |
| adenylate kinase domain containing 1 | AKD1 | 0.00E+00 | NM_145025 | 1 |
| ADP-ribosylation factor-like 6 interacting protein 1 | ARL6IP1 | 0.00E+00 | NM_015161 | 1 |
| CD58 molecule | CD58 | 0.00E+00 | NR_026665 | 1 |
| clusterin | CLU | 0.00E+00 | NM_203339 | 1 |
| cyclin-dependent kinase inhibitor 1C | CDKN1C | 0.00E+00 | NM_000076 | 1 |
| cytochrome c oxidase subunit III | MT-CO3 | 6.00E-76 | XM_002342023 | 3* |
| family with sequence similarity 32 | FAM32A | 0.00E+00 | NM_014077 | 1 |
| ferritin | FTL | 0.00E+00 | NM_000146 | 1 |
| glutamate-ammonia ligase | GLUL | 0.00E+00 | NM_002065 | 1 |
| metallothionein 1X | MT1X | 2.00E-128 | NM_005952 | 1 |
| metastasis associated lung adenocarcinoma transcript | MALAT1 | 0.00E+00 | NR_002819 | 6* |
| microtubule-associated protein | MAPRE2 | 0.00E+00 | NM_014268 | 1 |
| M-phase phosphoprotein 8 | MPHOSPH8 | 0.00E+00 | NM_017520 | 1 |
| nudix -type motif 5 | NUDT5 | 0.00E+00 | NM_014142 | 1 |
| prostaglandin reductase 1 | PTGR1 | 0.00E+00 | NM_012212 | 1 |
| serine incorporator 3 | SERINC3 | 0.00E+00 | NM_198941 | 1 |
| cytochrome b | CYTB | 0.00E+00 | XR_078322 | 1 |
| solute carrier family 25 | SLC25A4 | 0.00E+00 | NM_001151 | 1 |
| S-phase kinase-associated protein 1 | SKP1 | 0.00E+00 | NM_170679 | 1 |
| TIMP metallopeptidase inhibitor 3 | TIMP3 | 3.00E-86 | NM_000362 | 1 |
| transcription elongation factor B (SIII) | TCEB1 | 3.00E-139 | NM_005648 | 1 |
| translocase of outer mitochondrial membrane 5 | TOMM5 | 0.00E+00 | NM_001001790 | 1 |
| tubulin, beta 2C | TUBB2C | 2.00E-120 | NM_006088 | 1 |
| tubulin, delta 1 | TUBD1 | 2.00E-81 | NM_016261 | 1 |
| tumor necrosis factor, alpha-induced protein 6 | TNFAIP6 | 0.00E+00 | NM_007115 | 1 |
| tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein | YWHAB | 8.00E-110 | NM_003404 | 1 |
| Unknown genes | 7 |
