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Table 2 cDNAs selected from all 3 forward SHH libraries.

From: Identification of differentially expressed genes in SHSY5Y cells exposed to okadaic acid by suppression subtractive hybridization

Gene name Gene Symbol E-value Genebank No. Number of genes
3 h     24
ATP synthase F0 subunit 6 ATP6 2.00E-173 XM_002345305 1
28S ribosomal RNA   1.00E-36 NR_003287 3*
B-cell receptor-associated protein 31 BCAP31 0.00E+00 NM_005745 1
calmodulin 2 CALM2 0.00E+00 NM_001743 1
chromosome 6 open reading frame 125 SGA-81M 0.00E+00 NM_032340 1
coiled-coil domain containing 56 CCDC56 0.00E+00 NM_001040431 1
ferritin FTH1 2.00E-30 NM_002032 2*
FSHD region gene 1 family, member B FRG1B 0.00E+00 NR_003579 1
H2A histone family, member Z H2AFZ 8.00E-153 NM_002106 1
H3 histone, family 3A H3F3A 1.00E-163 NM_002107 1
lysosomal protein transmembrane 4 alpha LAPTM4A 0.00E+00 NM_014713 1
mitochondrial ribosomal protein L42 MRPL42 0.00E+00 NM_172178 1
fascin FSCN1 3.00E-29 AAH07539 1
nerve growth factor receptor TNFRSF16 6.00E-142 NM_206915 1
phosphoserine phosphatase PSPH 2.00E-139 NM_004577 1
regulator of G-protein signaling 5 RGS5 0.00E+00 NM_003617 1
small nuclear ribonucleoprotein D3 SNRPD3 0.00E+00 NM_004175 1
superoxide dismutase 1 SOD1 0.00E+00 NM_000454 1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin SMARCE1 0.00E+00 NM_003079 1
ubiquitin C UBC 5.00E-39 NM_021009 1
Unknown genes     1
24 h     47
calcyclin binding protein CACYBP 0.00E+00 NM_014412 1
28S ribosomal RNA   1.00E-36 NR_003287 2*
calmodulin 2 CALM2 0.00E+00 NM_001743 1
casein kinase 1 CSNK1A1 0.00E+00 NM_001892 1
chromosome 14 open reading frame 147 SSSPTA 9.00E-93 NM_138288 1
claudin domain containing 1 CLDND1 0.00E+00 NM_019895 1
early growth response 1 EGR1 0.00E+00 NM_001964 1
ferritin FTL 6.00E-161 NM_000146 1
glutamate-ammonia ligase (glutamine synthetase) GLUL 0.00E+00 NM_002065 3*
glyceraldehyde-3-phosphate dehydrogenase GAPDH 0.00E+00 NM_002046 1
GTP binding protein overexpressed in skeletal muscle GEM 0.00E+00 NM_181702 2*
heat shock 70 kDa protein 8 HSPA8 0.00E+00 NM_006597 1
heat shock protein 90 kDa alpha (cytosolic) HSP90AA1 0.00E+00 NM_005348 1
integrator complex subunit 6 INTS6 0.00E+00 NM_001039937 1
mab-21-like 1 MAB21L1 0.00E+00 NM_005584 1
methionine adenosyltransferase II, beta MAT2B 9.00E-153 NM_182796 1
mitochondrial ribosomal protein L42 MRPL42 0.00E+00 NM_014050 1
NADH dehydrogenase (ubiquinone) 1 NDUFAB1 0.00E+00 NM_005003 1
neurofilament, medium polypeptide NEFM 0.00E+00 NM_005382 1
nudix-type motif 5 NUDT5 0.00E+00 NM_014142 1
pituitary tumor-transforming 1 PTTG1 0.00E+00 NM_004219 1
polo-like kinase 1 PLK1 5.00E-103 NM_005030 1
ribosomal protein L15 RPL15 0.00E+00 NM_002948 1
ribosomal protein L23a RPL23A 0.00E+00 NM_000984 1
RNA binding motif protein 7 RBM7 3.00E-111 NM_016090 1
shisa homolog 2 SHISA2 0.00E+00 NM_001007538 1
cytochrome b CYTB 0.00E+00 XR_078322 1
SNF2 histone linker PHD RING helicase SHPRH 0.00E+00 NM_001042683 1
TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor TAF9 0.00E+00 NM_003187 1
Tax1 (human T-cell leukemia virus type I) binding protein 1 TAX1BP1 0.00E+00 NM_006024 1
triosephosphate isomerase 1 TPI1 0.00E+00 NM_000365 2*
Unknown genes     11
48 h     43
actin, beta ACTB 0.00E+00 NM_001101 3
adenylate kinase domain containing 1 AKD1 0.00E+00 NM_145025 1
ADP-ribosylation factor-like 6 interacting protein 1 ARL6IP1 0.00E+00 NM_015161 1
CD58 molecule CD58 0.00E+00 NR_026665 1
clusterin CLU 0.00E+00 NM_203339 1
cyclin-dependent kinase inhibitor 1C CDKN1C 0.00E+00 NM_000076 1
cytochrome c oxidase subunit III MT-CO3 6.00E-76 XM_002342023 3*
family with sequence similarity 32 FAM32A 0.00E+00 NM_014077 1
ferritin FTL 0.00E+00 NM_000146 1
glutamate-ammonia ligase GLUL 0.00E+00 NM_002065 1
metallothionein 1X MT1X 2.00E-128 NM_005952 1
metastasis associated lung adenocarcinoma transcript MALAT1 0.00E+00 NR_002819 6*
microtubule-associated protein MAPRE2 0.00E+00 NM_014268 1
M-phase phosphoprotein 8 MPHOSPH8 0.00E+00 NM_017520 1
nudix -type motif 5 NUDT5 0.00E+00 NM_014142 1
prostaglandin reductase 1 PTGR1 0.00E+00 NM_012212 1
serine incorporator 3 SERINC3 0.00E+00 NM_198941 1
cytochrome b CYTB 0.00E+00 XR_078322 1
solute carrier family 25 SLC25A4 0.00E+00 NM_001151 1
S-phase kinase-associated protein 1 SKP1 0.00E+00 NM_170679 1
TIMP metallopeptidase inhibitor 3 TIMP3 3.00E-86 NM_000362 1
transcription elongation factor B (SIII) TCEB1 3.00E-139 NM_005648 1
translocase of outer mitochondrial membrane 5 TOMM5 0.00E+00 NM_001001790 1
tubulin, beta 2C TUBB2C 2.00E-120 NM_006088 1
tubulin, delta 1 TUBD1 2.00E-81 NM_016261 1
tumor necrosis factor, alpha-induced protein 6 TNFAIP6 0.00E+00 NM_007115 1
tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein YWHAB 8.00E-110 NM_003404 1
Unknown genes     7
  1. *Only one GenBank identity accession number and the highest Blastp E-value were given here because of the table capacity limitation.