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Table 3 cDNAs selected from all 3 reverse SHH libraries.

From: Identification of differentially expressed genes in SHSY5Y cells exposed to okadaic acid by suppression subtractive hybridization

Gene name Gene Symbol E-value Genebank No. Number of genes
3 h     35
ferritin FTL 0.00E+00 NM_000146 1
phosphoglycerate kinase 1 PGK1 0.00E+00 NM_000291 1
SMT3 suppressor of mif two 3 homolog 2 SUMO2 5.00E-115 NM_001005849 1
ribosomal protein S14 RPS14 2.00E-52 NM_001025071 1
ATPase ATP6V0B 1.00E-47 NM_001039457 1
tubulin, beta 2A TUBB2A 2.00E-27 NM_001069 1
actin, beta ACTB 0.00E+00 NM_001101 1
yippee-like 5 YPEL5 3.00E-47 NM_001127401 1
translation elongation factor EEF1A1 0.00E+00 NM_001402 1
early growth response 1 EGR1 0.00E+00 NM_001964 1
glyceraldehyde-3-phosphate dehydrogenase GAPDH 0.00E+00 NM_002046 1
proteasome 26S subunit, ATPase, 5 PSMC5 0.00E+00 NM_002805 1
signal sequence receptor, alpha SSR1 1.00E-130 NM_003144 1
protein disulfide isomerase family A, member 6 PDIA6 0.00E+00 NM_005742 1
malate dehydrogenase MDH1 0.00E+00 NM_005917 2*
ubiquinol-cytochrome c reductase UQCRH 0.00E+00 NM_006004 1
translocase of inner mitochondrial membrane TIMM17A 0.00E+00 NM_006335 1
heat shock 70 kDa protein 8 HSPA8 0.00E+00 NM_006597 2*
peroxiredoxin 3 PRDX3 0.00E+00 NM_006793 1
Sec61 beta subunit SEC61B 0.00E+00 NM_006808 1
CD24 molecule CD24 0.00E+00 NM_013230 1
striatin, calmodulin binding protein 3 STRN3 0.00E+00 NM_014574 1
nucleolar protein 11 NOL11 6.00E-158 NM_015462 1
cleavage and polyadenylation factor subunit PCF11 0.00E+00 NM_015885 1
zinc finger, CCHC domain ZCCHC17 3.00E-138 NM_016505 1
homolog 2, suppressor of mek1 SMEK2 0.00E+00 NM_020463 1
5-azacytidine induced 2 AZI2 2.00E-161 NM_022461 1
anaphase promoting complex subunit 13 ANAPC13 2.00E-94 NR_024401 1
cytochrome c oxidase subunit II MT-CO2 4.00E-150 XR_078889 1
NADH dehydrogenase subunit 4 MT-ND4 7.00E-54 ADG46850 1
Unknown genes     3
24 h     44
cholinergic receptor, nicotinic, alpha 3 CHRNA3 0.00E+00 NM_000743 1
ribosomal protein L3 RPL3 0.00E+00 NM_000967 1
ribosomal protein S6 RPS6 0.00E+00 NM_001010 1
actin, beta ACTB 0.00E+00 NM_001101 1
casein kinase 2 CSNK2B 4.00E-176 NM_001320 1
eukaryotic translation elongation factor 1 alpha 1 EEF1A1 0.00E+00 NM_001402 1
calmodulin 2 CALM2 0.00E+00 NM_001743 4*
septin 7 SEPT7 0.00E+00 NM_001788 1
LIM domain only 1 (rhombotin 1) LMO1 0.00E+00 NM_002315 1
proteasome beta type, 6 PSMB6 0.00E+00 NM_002798 1
signal recognition particle 9 kDa SRP9 0.00E+00 NM_003133 1
translocated promoter region TPR 0.00E+00 NM_003292 1
regulator of G-protein signaling 5 RGS5 0.00E+00 NM_003617 1
NADH dehydrogenase Fe-S protein 2 NDUFS2 0.00E+00 NM_004550 1
myeloid/lymphoid or mixed-lineage leukemia MLLT11 4.00E-143 NM_006818 1
stathmin-like 2 STMN2 0.00E+00 NM_007029 1
component of oligomeric golgi complex 4 COG4 0.00E+00 NM_015386 1
RNA-binding region containing 3 RNPC3 0.00E+00 NM_017619 1
zinc finger, matrin type 5 ZMAT5 0.00E+00 NM_019103 1
synaptotagmin IV SYT4 0.00E+00 NM_020783 2*
non-metastatic cells 1, protein NM23A NM23A 0.00E+00 NM_198175 1
cytochrome c oxidase subunit III MT-CO3 0.00E+00 XM_002342023 4*
ATP synthase F0 subunit 6 MT-ATP6 0.00E+00 XM_002345305 4*
cytochrome c oxidase subunit II MT-CO2 5.00E-149 XR_078889 7*
NADH dehydrogenase subunit 4 MT-ND4 0.00E+00 XR_078993 1
Unknown genes     2
48 h     54
glutathione S-transferase GSTP1 0.00E+00 NM_000852 1
neuropeptide Y NPY 0.00E+00 NM_000905 1
ribosomal protein L3 RPL3 8.00E-120 NM_000967 2*
ribosomal protein L4 RPL4 0.00E+00 NM_000968 1
ribosomal protein L27a RPL27A 0.00E+00 NM_000990 1
ribosomal protein L31 RPL31 1.00E-175 NM_000993 1
ribosomal protein S4 RPS4X 0.00E+00 NM_001007 1
chromosome 5 open reading frame 13 C5orf13 3.00E-85 NM_001142478 1
adenylate kinase 2 AKA2 7.00E-127 NM_001625 1
calmodulin 2 CALM2 0.00E+00 NM_001743 4*
translation initiation factor 4E EIF4E 0.00E+00 NM_001968 1
lactate dehydrogenase B LDHB 0.00E+00 NM_002300 1
NADH dehydrogenase (ubiquinone) 1 NDUFC1 2.00E-100 NM_002494 1
signal recognition particle 9 kDa SRP9 0.00E+00 NM_003133 2*
regulator of G-protein signaling 5 RGS5 2.00E-68 NM_003617 4*
DNAJC25-GNG10 readthrough transcript DNAJC25-GNG10 2.00E-166 NM_004125 1
guanine nucleotide binding protein G protein 0.00E+00 NM_004126 1
sperm associated antigen 7 SPAG7 0.00E+00 NM_004890 1
heat shock protein 90 kDa HSP90AA1 2.00E-166 NM_005348 1
chaperonin containing TCP1, subunit 3 CCT3 0.00E+00 NM_005998 1
ATP synthase ATP5L 9.00E-140 NM_006476 1
mortality factor 4 like 1 MORF4L1 5.00E-96 NM_006791 1
myeloid/lymphoid or mixed-lineage leukemia MLLT11 0.00E+00 NM_006818 1
transmembrane emp24-like trafficking protein TMED10 0.00E+00 NM_006827 1
dickkopf homolog 1 DKK1 4.00E-70 NM_012242 1
signal peptidase complex subunit 1 SPCS1 0.00E+00 NM_014041 1
mitochondrial ribosomal protein L42 MRPL42 5.00E-142 NM_014050 1
HIG1 hypoxia inducible domain family HIGD1A 0.00E+00 NM_014056 1
signal peptidase complex subunit 2 SPCS2 0.00E+00 NM_014752 1
mitochondrial ribosomal protein S7 MRPS7 4.00E-156 NM_015971 1
splicing factor 3B SF3B14 0.00E+00 NM_016047 1
hematological and neurological expressed 1 HN1 5.00E-168 NM_016185 1
transmembrane protein 9 TMEM9 0.00E+00 NM_016456 1
chromosome 20 open reading frame 3 APMAP 0.00E+00 NM_020531 1
synaptotagmin IV SYT4 0.00E+00 NM_020783 1
ribosomal protein L41 RPL41 0.00E+00 NM_021104 1
transmembrane protein 167A TMEM167A 0.00E+00 NM_174909 1
tubulin, beta TUBB 6.00E-101 NM_178014 1
THAP domain containing 5 THAP5 6.00E-154 NM_182529 1
K(lysine) acetyltransferase 5 KAT5 0.00E+00 NM_182709 1
gonadotropin-releasing hormone GNRHR2 0.00E+00 NR_002328 1
cytochrome c oxidase subunit II MT-CO2 1.00E-151 XR_078889 1
Unknown genes     4
  1. *Only one GenBank identity accession number and the highest Blastp E-value were given here because of the table capacity limitation.
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BMC Genomics

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