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Table 2 BouillaBase comparative analyzes using BAC data from Oreochromis niloticus against three fish models

From: Integrating cytogenetics and genomics in comparative evolutionary studies of cichlid fish

LG

Marker/gene

Scaffold

Medaka

Stickleback

Pufferfish

1

CYP19A1

287

chr3:12108168..12108464

ns

chr5:9794344..9794562

1

ACG/CTT382

17

chr3:20997422..20997535

chr2:12085900..12086028

chr5:4855030..4855202

1

BJ690985

NID

chr19:4811402..4811495

ns

ns

1

WT1

NID

chr3:22126505..22127094

chr2:12884672..12885323

chr5:4189140..4189790

3

UNH180

143

chr18:20335074..20335221

Ns

chrUn:92504595..92504738

3

UNH115

NID

chr18:12554314..12554397

chrUn:7877924..7878007

chrUn:98704287..98704370

3

TRP1

88

chrUn:35101810..35101948

chr7:5614225..5614569

chrUn:56261613..56261704

3

GM526

89

chr18:27239660..27426308

chr7:10064534..10064979

ns

5

AKR

155

chr5:7748231..7748360

chrUn:4859687..4859812

chr11:3868317..3868442

5

AKR

155

chr5:7708974..7709058

chrUn:4889317..4982133

chr11:3884393..3884499

5

MME

340

chr13:11994389..11995120

chr1:10620278..10620987

chr16:2528394..2528542

5

MME

162

chr13:12106428..12106606

chr1:10575763..10575935

ns

5

Green OPSIN

NID

chrUn:142344721..142344800

chrUn:4181024..4181104

chr11:5142370..5142445

5

Blue/red OPSIN

19

chr5:26959747..26959838

chr17:10579335..10579447

ns

5

c-SKI

NID

chr5:6600759..6600879

chrUn:3593246..3593357

chr11:4411020..4411130

5

c-SKI

64

chr5:6741965..6742076

chrUn:3505497..3505978

chr11:4336173..4336280

7

DUSP6

52

Ns

chr19:13,105,072..13,105,575

chr13:6,253,123..6,253,497

7

IGFBP2

NID

chrUn:75,506,034..75,506,204

chrUn:62,550,041..62,550,211

chr13:6,057,596..6,145,055

7

UNH179

NID

chr6:14,100,033..14,100,152

chr19:16,793,012..16,793,135

chr13:3,161,846..3,161,931

7

UNH896

NID

Ns

chr19:2,835,715..2,992,804

ns

  1. NID, not identified scaffold in O. niloticus; ns, no similarity; chr, chromosome; chrUn, unidentified chromosome.