From: High depth, whole-genome sequencing of cholera isolates from Haiti and the Dominican Republic
Isolate | Chromosome | Location | Ref Allele | Variant Allele | Associated gene | Type of change |
---|---|---|---|---|---|---|
DR1 | 1 | 1565917/1572833* | T | C | rstA | Upstream of gene |
H2* | 2 | 166022 | C | T | TagA-related protein | Nonsyn |
DR1 | 2 | 467913 | G | A | Pyruvate-flavodoxin oxidoreductase | Syn |
DR1 | 1 | 3055641†| A | C | Transposase Tn3 family protein | Nonsyn |