A high-density genetic map of Arachis duranensis, a diploid ancestor of cultivated peanut

Nagy, Ervin D; Guo, Yufang; Tang, Shunxue; Bowers, John E; Okashah, Rebecca A; Taylor, Christopher A; Zhang, Dong; Khanal, Sameer; Heesacker, Adam F; Khalilian, Nelly; Farmer, Andrew D; Carrasquilla-Garcia, Noelia; Penmetsa, R Varma; Cook, Douglas; Stalker, H Thomas; Nielsen, Niels; Ozias-Akins, Peggy; Knapp, Steven J

doi:10.1186/1471-2164-13-469

BMC Genomics

Table 1 Previously published genomic SSR markers mapped in Arachis duranensis

From: A high-density genetic map of Arachis duranensis, a diploid ancestor of cultivated peanut

Universal Name	Original Name	Forward (5′-3′)	Reverse (5′-3′)	Reference
GM7	Ah1TC1D02	GATCCAAAATCTCGCCTTGA	GCTGCTCTGCACAACAAGAA	Moretzsohn et al. 2005
GM10	Ah1TC1E05	GAAGGATAAGCAATCGTCCA	GGATGGGATTGAACATTTGG	Moretzsohn et al. 2005
GM13	Ah1TC1H04	CATTACTTCCTAGGTTTGTTTTCCA	ATGGCGTGACAACGGAAC	Moretzsohn et al. 2005
GM16	Ah1TC2B01	TTGCAGAAAAGGCAGAGACA	GAAAGAAGCTAAGAAGGACCCATA	Moretzsohn et al. 2005
GM19	Ah1TC2C07	CACCACACTCCCAAGGTTTT	TCAAGAACGGCTCCAGAGTT	Moretzsohn et al. 2005
GM22	Ah1TC2D06	AGGGGGAGTCAAAGGAAAGA	TCACGATCCCTTCTCCTTCA	Moretzsohn et al. 2005
GM24	Ah1TC2E05	GAATTTATAAGGCGTGGCGA	CCATCCCTTCTTCCTTCACA	Moretzsohn et al. 2005
GM28	Ah1TC3A12	GCCCATATCAAGCTCCAAAA	TAGCCAGCGAAGGACTCAAT	Moretzsohn et al. 2005
GM32	Ah1TC3E02	TGAAAGATAGGTTTCGGTGGA	CAAACCGAAGGAGGAACTTG	Moretzsohn et al. 2005
GM38	Ah1TC3H02	CTCTCCGCCATCCATGTAAT	ATGGTGAGCTCGACGCTAGT	Moretzsohn et al. 2005
GM58	Ah1TC4G06	ATTTCACATTCCCTAGCCCC	CATCGACTGACTTGAAAAATGG	Moretzsohn et al. 2005
GM59	Ah1TC4G10	TTCGGTCATGTTTGTCCAGA	CTCGAGTGCTCACCCTTCAT	Moretzsohn et al. 2005
GM66	Ah1TC5D06	GAAATTTTAGTTTTCAGCACAGCA	TTTTCCCCTCTTAAATTTTCTCG	Moretzsohn et al. 2005
GM68	Ah1TC6E01	CTCCCTCGCTTCCTCTTTCT	ACGCATTAACCACACACCAA	Moretzsohn et al. 2005
GM69	Ah1TC6G09	GGAGGTTGCATGCATCATAGT	TCATTGAACGTATTTGAAAGCTC	Moretzsohn et al. 2005
GM71	Ah2TC7A02	CGAAAACGACACTATGAAACTGC	CCTTGGCTTACACGACTTCCT	Moretzsohn et al. 2005
GM74	Ah2TC7E04	GAAGGACCCCATCTATTCAAA	TCCGATTTCTCTCTCTCTCTCTC	Moretzsohn et al. 2005
GM76	Ah2TC7G10	AATGGGGTTCACAAGAGAGAGA	CCAGCCATGCACTCATAGAATA	Moretzsohn et al. 2005
GM83	Ah2TC9C06	CAAATGGCAGAGTGCGTCTA	CCCTCCTGACTGGGTCCT	Moretzsohn et al. 2005
GM92	Ah2TC11A04	ACTCTGCATGGATGGCTACAG	CATGTTCGGTTTCAAGTCTCAA	Moretzsohn et al. 2005
GM96	Ah2TC11C06	TCCAACAAACCCTCTCTCTCT	GAACAAGGAAGCGAAAAGAA	Moretzsohn et al. 2005
GM117	Ah2AC3C02	TCTAACGCACACAAATCGAA	CTTGTACCTGCGCCATTCT	Moretzsohn et al. 2005
GM126	AS1RI1F06	TGTCTCTCTTCCTTTCCTTGCT	CCTTTTGCTTCTTTGCTTCC	Moretzsohn et al. 2005
GM162	AS1RN9C02	CGTTACACTGAGCCAGCAACTC	ACGGCGGCGATAGTTTCA	Moretzsohn et al. 2005
GM170	AS1RN11E05	CTCGGTCCAGAAAACACAGG	GTAGAGGCGAAGAAGGCAGAG	Moretzsohn et al. 2005
GM218	gi-30419832	GCCACTTTATTCTAAGCACTCC	AAGAGACCACACGCTCACA	Moretzsohn et al. 2005
GM226	gi-30419936	TCACAGATCCATAGACTTTAACATAGC	CCGGTGTGGATTCATAGTAGAG	Moretzsohn et al. 2005
GM255	pPGPSeq4H6	CCAACATTGCAGAAGCAAGA	CAAAGAGAGGCACACCACAA	Moretzsohn et al. 2005
GM286	Ah-193	CTTGCTGAAGGCAACTCCTACG	TCGGTTTGTCTCTTTGGTCACTC	Moretzsohn et al. 2004
GM324	Ah-649	GGAAATGCCAAATCCATCCTTC	GTTGTTCGGTGTGAAAACGGTC	Moretzsohn et al. 2004
GM328	Ah-671	AGAAAGAGCACGGGACATTACC	ATGAATGAGTGGTCATACGCGA	Moretzsohn et al. 2004
GM565	pPGSseq17E3	TTTCCTTTCAACCCTTCGTG	AATGAGACCAGCCAAAATGC	Ferguson et al. 2004
GM664	GM664	CTTCACCTCCAAAATCAACCA	ACCGCTGACATTTGATTGTTC	Guo et al. 2011
GM671	GM671	TGGATGCTGTAAGGAATGGAC	TTATCGAGCTTGCCTCAGAAA	Guo et al. 2011

Markers were renamed in order to follow a unified marker nomenclature. The complete list of renamed markers can be found in Guo et al. (Guo Y et al: Comparative mapping in intraspecific populations uncovers a high degree of macrosynteny between A-and B-genome diploid species of peanut, Submitted).

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ISSN: 1471-2164

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