Table 2 Summary of the number and types of SNP in different classes of genes
PCA | Total | KN400 orthologs | % with orthologs | Total SNP | Total NS SNP | % NS SNP | genes with SNP | % Genes w.SNP | Genes with NS SNP | % genes w.NS SNP | SNP/ gene | NS SNP/ gene | SNP/ SNPed gene | NS SNP/ SNPed gene | # genes ≥1.2% NS SNP | % genes ≥1.2% NS SNP |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
genes | 3432 | 3192 | 92.6 | 18146 | 5109 | 28.2 | 1160 | 36.3 | 786 | 24.6 | 5.6 | 1.6 | 15.5 | 4.4 | 114 | 3.6 |
central metabolism | 85 | 85 | 100.0 | 180 | 37 | 20.6 | 34 | 40.0 | 17 | 20.0 | 2.1 | 0.4 | 5.3 | 1.1 | 1 | 1.2 |
cytochromes | 95 | 94 | 98.9 | 1156 | 365 | 31.6 | 48 | 51.1 | 36 | 38.3 | 12.3 | 3.9 | 24.1 | 7.6 | 7 | 7.4 |
increased expression | 93 | 85 | 91.4 | 1518 | 388 | 25.6 | 43 | 50.6 | 33 | 38.8 | 17.9 | 4.6 | 35.3 | 9.0 | 6 | 7.1 |