genomic | cell line | |
---|---|---|
Gender | male | male |
Gross mapping yield (Gb) | 238.95 | 217.33 |
SNP Transitions/transversions | 2.14076 | 2.1468 |
SNP het/hom ratio | 1.582496107 | 1.571157051 |
INS het/hom ratio | 1.344223031 | 1.289809921 |
DEL het/hom ratio | 1.663654705 | 1.654600015 |
SUB het/hom ratio | 1.715782613 | 1.713757678 |
SNP total count | 3346813 | 3271797 |
INS total count | 187392 | 170265 |
DEL total count | 204807 | 186626 |
SUB total count | 71344 | 66370 |
SNP novel rate | 0.0487541 | 0.0472266 |
INS novel rate | 0.189213 | 0.17794 |
DEL novel rate | 0.239469 | 0.235096 |
SUB novel rate | 0.309865 | 0.295857 |
Fully called genome fraction | 0.967831529 | 0.961877785 |
Partially called genome fraction | 0.004574129 | 0.006604011 |
No-called genome fraction | 0.027594342 | 0.031518204 |
Synonymous SNP loci | 9778 | 9387 |
Missense SNP loci | 9329 | 8935 |
Nonsense SNP loci | 90 | 89 |
Nonstop SNP loci | 13 | 13 |
Frame-shifting INS loci | 121 | 110 |
Frame-shifting DEL loci | 108 | 100 |
Frame-shifting SUB loci | 17 | 13 |
Frame-preserving INS loci | 113 | 101 |
Frame-preserving DEL loci | 107 | 91 |
Frame-preserving SUB loci | 258 | 227 |
Frame-shifting/preserving ratio | 0.514644351 | 0.53221957 |
Nonsyn/syn SNP ratio | 0.954080589 | 0.951848301 |
Insertion/deletions ratio | 0.914968727 | 0.912332687 |
Ins + del/SNP ratio | 0.117185812 | 0.109081034 |
Coding insertion/deletions ratio | 1.060465116 | 1.078534031 |
Coding SNP/all SNP ratio | 0.00626387 | 0.006151054 |
Coding (ins + del)/all (ins + del) ratio | 0.001129529 | 0.001112384 |