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Table 1 Examples of ANT gene models in mammals

From: Computational identification of transcriptionally co-regulated genes, validation with the four ANT isoform genes

 

Motif 1

Motif 2

Motif 3

Motif 4

Motif 5

ANT1

OXBOX

V$GAT1. 04*

CAAT

O$VTATA.01

(TSS)

ANT2

GRBOX

V$MZF1.01

V$EGR1.02

V$SP1.01

O$VTATA.01

ANT3

V$CTCF*

V$CHRE*

V$RXRF*

V$RORA*

ATG

ANT4

V$SMAD3.01*

V$MZF1.02*

V$MAZ.01*

V$HIFF*

V$HIFF*

  1. Matrix families (i.e. V$MEF2) or matrices (i.e. V$NRF2.01) with an asterisk were identified from phylogenetic analyses and showed to be conserved in orthologous promoters (Genomatix FrameWorker tool). The other matrices are selected with the Genomatix MatInspector tool on the human promoter sequences.
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BMC Genomics

ISSN: 1471-2164

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