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Table 3 Effects of sequencing depth on TPR at different n and depths

From: Efficient experimental design and analysis strategies for the detection of differential expression using RNA-Sequencing

Depth n = 2 n = 3 n = 4 n = 6 n = 8 n = 12
25% 1.57 6.24 10.40 19.18 26.08 35.41
50% 2.58 7.63 12.40 22.34 29.66 39.16
75% 3.01 8.47 13.16 23.44 31.57 40.65
100% 3.26 8.95 13.95 24.30 32.72 41.57
  1. Effects of sequencing depth on TPR values for a subset of our tested depths = 25%, 50%, 75% & 100%.