TY - JOUR AU - Gibson, D. G. PY - 2010 DA - 2010// TI - Creation of a Bacterial Cell Controlled by a Chemically Synthesized Genome JO - Science VL - 329 UR - https://doi.org/10.1126/science.1190719 DO - 10.1126/science.1190719 ID - Gibson2010 ER - TY - BOOK AU - Gibson, G. AU - Muse, S. V. PY - 2009 DA - 2009// TI - A Primer of Genome Science ID - Gibson2009 ER - TY - BOOK AU - Percus, J. K. PY - 2007 DA - 2007// TI - Mathematics of Genome Analysis PB - Cambridge University Press CY - Cambridge Studies in Mathematical Biology ID - Percus2007 ER - TY - JOUR PY - 2012 DA - 2012// TI - ENCODE JO - Nature VL - 489 UR - https://doi.org/10.1038/489045a DO - 10.1038/489045a ID - ref4 ER - TY - JOUR AU - Chor, B. AU - Horn, D. AU - Goldman, N. AU - Levy, Y. AU - Massingham, T. PY - 2009 DA - 2009// TI - Genomic DNA k-mer spectra: models and modalities JO - Genome Biol VL - 10 UR - https://doi.org/10.1186/gb-2009-10-10-r108 DO - 10.1186/gb-2009-10-10-r108 ID - Chor2009 ER - TY - JOUR AU - Zhou, F. AU - Olman, V. AU - Xu, Y. PY - 2008 DA - 2008// TI - Barcodes for genomes and applications JO - BMC Bioinf VL - 9 UR - https://doi.org/10.1186/1471-2105-9-546 DO - 10.1186/1471-2105-9-546 ID - Zhou2008 ER - TY - JOUR AU - Deschavanne, P. J. AU - Giron, A. AU - Vilain, J. AU - Fagot, G. PY - 1999 DA - 1999// TI - Genomic Signature: Characterization and Classification of Species Assessed by Chaos Game Representation of Sequences JO - Mol Biol Evol VL - 16 UR - https://doi.org/10.1093/oxfordjournals.molbev.a026048 DO - 10.1093/oxfordjournals.molbev.a026048 ID - Deschavanne1999 ER - TY - JOUR AU - Hao, B. AU - Qi, J. PY - 2004 DA - 2004// TI - Prokaryote phylogeny without sequence alignment: from avoidance signature to composition distance JO - J Bioinf and Comput Biol VL - 2 UR - https://doi.org/10.1142/S0219720004000442 DO - 10.1142/S0219720004000442 ID - Hao2004 ER - TY - JOUR AU - Fofanov, Y. AU - Luo, Y. AU - Katili, C. AU - Wang, J. AU - Belosludtsev, Y. AU - Powdrill, T. AU - Belapurkar, C. AU - Fofanov, V. AU - Li, T. B. AU - Chumakov, S. AU - Pettitt, B. PY - 2008 DA - 2008// TI - How independent are the appearances of n-mers in different genomes? JO - Bioinformatics VL - 20 UR - https://doi.org/10.1093/bioinformatics/bth266 DO - 10.1093/bioinformatics/bth266 ID - Fofanov2008 ER - TY - JOUR AU - Vinga, S. PY - 2003 DA - 2003// TI - Alignment-free sequence comparison - a review JO - Bioinformatics VL - 19 UR - https://doi.org/10.1093/bioinformatics/btg005 DO - 10.1093/bioinformatics/btg005 ID - Vinga2003 ER - TY - JOUR AU - Mantegna, R. N. AU - Buldyrev, S. AU - Godberger, A. AU - Havlin, S. AU - Peng, C. AU - Simons, M. AU - Stanley, H. PY - 1994 DA - 1994// TI - Linguistic Features of Noncoding DNA Sequences JO - Phys Rev Lett VL - 73 UR - https://doi.org/10.1103/PhysRevLett.73.3169 DO - 10.1103/PhysRevLett.73.3169 ID - Mantegna1994 ER - TY - JOUR AU - Hampikian, G. AU - Andersen, T. PY - 2007 DA - 2007// TI - Absent sequences: nullomers and primes JO - Pac Symp Biocomputing VL - 12 ID - Hampikian2007 ER - TY - JOUR AU - Haubold, B. AU - Pierstorff, N. AU - Möller, F. AU - Wiehe, T. PY - 2005 DA - 2005// TI - Genome comparison without alignment using shortest unique substrings JO - BCM Bioinf VL - 6 UR - https://doi.org/10.1186/1471-2105-6-123 DO - 10.1186/1471-2105-6-123 ID - Haubold2005 ER - TY - JOUR AU - Ichinose, N. AU - Yada, T. AU - Gotoh, O. PY - 2012 DA - 2012// TI - Large-scale motif discovery using DNA Gray code and equiprobable oligomers JO - Bioinformatics VL - 28 UR - https://doi.org/10.1093/bioinformatics/btr606 DO - 10.1093/bioinformatics/btr606 ID - Ichinose2012 ER - TY - JOUR AU - Tai, Y. PY - 2011 DA - 2011// TI - Coding-Independent Regulation of the Tumor Suppressor PTEN by Competing Endogenous mRNAs JO - Cell VL - 147 UR - https://doi.org/10.1016/j.cell.2011.09.029 DO - 10.1016/j.cell.2011.09.029 ID - Tai2011 ER - TY - JOUR AU - Fici, G. AU - Mignosi, F. AU - Restivo, A. AU - Sciortino, M. PY - 2006 DA - 2006// TI - Word assembly through minimal forbidden words JO - Theor Comput Sci VL - 359 UR - https://doi.org/10.1016/j.tcs.2006.03.006 DO - 10.1016/j.tcs.2006.03.006 ID - Fici2006 ER - TY - CHAP AU - Cicalese, F. AU - Erdös, P. AU - Lipták, Z. ED - Iliopoulos, C. ED - Smyth, W. F. PY - 2011 DA - 2011// TI - Efficient reconstruction of RC-equivalent strings BT - IWOCA 2010 - LNCS 6460 ID - Cicalese2011 ER - TY - CHAP AU - Castellini, A. AU - Manca, V. AU - Compri, S. AU - Tosadori, G. AU - Bicego, M. PY - 2011 DA - 2011// TI - Genome classification by dictionary-based indexes BT - Poster, presented at the Int. Conf. on Pattern Recognition in Bioinformatics (PRIB2011) ID - Castellini2011 ER - TY - STD TI - NCBI Genome database. [http://www.ncbi.nlm.nih.gov/sites/genome] UR - http://www.ncbi.nlm.nih.gov/sites/genome ID - ref19 ER - TY - STD TI - UCSC Genome Bioinformatics website. [http://hgdownload.cse.ucsc.edu/downloads.html] UR - http://hgdownload.cse.ucsc.edu/downloads.html ID - ref20 ER - TY - STD TI - EMBL-EBI website. [http://www.ebi.ac.uk/genomes/] UR - http://www.ebi.ac.uk/genomes/ ID - ref21 ER - TY - STD TI - QlikView website. [http://www.qlikview.com/] UR - http://www.qlikview.com/ ID - ref22 ER -