From: Genome-wide association study for T lymphocyte subpopulations in swine
Trait | No. SNPs | SNP Name | SSC. | Position | Significance levelb | Nearest gene | Distance (bp) |
---|---|---|---|---|---|---|---|
 |  |  |  | (bp)a |  |  |  |
CD4-CD8- T% | 3 | ALGA0006170 | SSC1 | 147676962 | A | SELS | 101263 |
 |  | ALGA0027442 | SSC4 | 106255554 | A | LOC100515138 | 15207 |
 |  | MARC0035862 | SSC17 | 26683704 | A | FLRT3 | 999166 |
CD4+CD8+ T% | 15 | ASGA0000475 | SSC1 | 5393161 | A | QKI | 197563 |
 |  | MARC0090836 | SSC5 | 18263549 | A | LOC100523435 | 8399 |
 |  | H3GA0016197 | SSC5 | 30846602 | A | LOC100514286 | within |
 |  | DRGA0005876 | SSC5 | 52631994 | A | LOC100153016 | 7905 |
 |  | ASGA0093882 | SSC8 | 27821389 | A | LOC100515221 | 68339 |
 |  | MARC0103793 | SSC9 | 117134341 | A | NCF2 | within |
 |  | ALGA0061180 | SSC11 | 18408471 | A | LOC100518860 | within |
 |  | ALGA0062506 | SSC11 | 55628913 | A | RNF219 | 152990 |
 |  | DRGA0012994 | SSC13 | 116721928 | A | LOC100518275 | Within |
 |  | ASGA0059251 | SSC13 | 116794774 | A | LOC100518275 | within |
 |  | H3GA0037561 | SSC13 | 117065279 | A | LOC100518275 | within |
 |  | MARC0024545 | SSC13 | 117511306 | A | LOC100739759 | within |
 |  | H3GA0037568 | SSC13 | 117963270 | A | CLDN11 | within |
 |  | ALGA0072642 | SSC13 | 118134975 | A | SLC7A14 | 22223 |
 |  | ASGA0077977 | SSC17 | 59215829 | A | CBLN4 | within |
CD4+CD8- T% | 31 | SIRI0000967 | SSC1 | 65386385 | A | MAP3K7 | 93369 |
 |  | ALGA0109882 | SSC1 | 65402776 | A | MAP3K7 | 76978 |
 |  | ALGA0003935 | SSC1 | 67256904 | A | LOC100152346 | within |
 |  | MARC0008049 | SSC6 | 74003688 | A | LOC100738715 | within |
 |  | ALGA0105115 | SSC9 | 127202082 | A | CD46 | 12474 |
 |  | MARC0076632 | SSC9 | 127394064 | B | LOC100514786 | within |
 |  | ASGA0046812 | SSC10 | 16205420 | A | LOC100513811 | within |
 |  | ALGA0057450 | SSC10 | 16220722 | A | LOC100513811 | within |
 |  | ALGA0061535 | SSC11 | 23576083 | A | TRNAE-UUC | 42913 |
 |  | M1GA0015162 | SSC11 | 61231196 | A | LOC100154696 | within |
 |  | ASGA0051093 | SSC11 | 61450492 | A | LOC100154696 | 112456 |
 |  | ALGA0108362 | SSC12 | 6596691 | A | LOC100518214 | 225784 |
 |  | MARC0009109 | SSC12 | 6637944 | A | SOX9 | 229926 |
 |  | ALGA0106073 | SSC12 | 6663787 | A | SOX9 | 204083 |
 |  | ASGA0052986 | SSC12 | 6791202 | A | SOX9 | 76668 |
 |  | ASGA0052974 | SSC12 | 6826155 | A | SOX9 | 41715 |
 |  | ALGA0064738 | SSC12 | 6891741 | A | SOX9 | 20500 |
 |  | H3GA0033370 | SSC12 | 6976387 | B | LOC100518393 | 21514 |
 |  | ASGA0053002 | SSC12 | 7105246 | A | LOC100519105 | 55408 |
 |  | ASGA0104370 | SSC12 | 7185885 | A | LOC100519105 | 136047 |
 |  | ALGA0064767 | SSC12 | 7400177 | A | LOC100519105 | 350339 |
 |  | ALGA0078815 | SSC14 | 76804400 | A | LOC100521406 | 85124 |
 |  | H3GA0041012 | SSC14 | 77946383 | A | PSAP | within |
 |  | ASGA0065687 | SSC14 | 107127514 | A | HTR7 | 260753 |
 |  | ALGA0087956 | SSC15 | 123078022 | A | LOC100516232 | 22744 |
 |  | INRA0055474 | SSC18 | 21991584 | A | LOC100622672 | 28674 |
 |  | ALGA0097499 | SSC18 | 22003396 | A | LOC100513190 | 3075 |
 |  | ASGA0079256 | SSC18 | 22055859 | A | LOC100525548 | 1899 |
 |  | ALGA0098112 | SSC18 | 38463920 | A | BMPER | 113622 |
 |  | MARC0089391 | SSC18 | 38488630 | A | BMPER | 88912 |
 |  | MARC0024065 | SSC18 | 50965324 | A | LOC100622432 | within |
CD4-CD8+ T% | 3 | ASGA0022812 | SSC4 | 126976845 | A | LOC100737939 | 107579 |
 |  | H3GA0041012 | SSC14 | 77946383 | A | PSAP | within |
 |  | ALGA0103427 | SSC15 | 127742340 | A | IKZF2 | within |
CD4+ T% | 6 | ASGA0023262 | SSC4 | 130826499 | A | LOC100151966 | 174827 |
 |  | ALGA0030335 | SSC5 | 7606208 | A | LOC100512654 | 6682 |
 |  | ALGA0122248 | SSC16 | 73417692 | A | LOC100518939 | 70693 |
 |  | INRA0055474 | SSC18 | 21991584 | A | LOC100513190 | within |
 |  | ASGA0079256 | SSC18 | 22055859 | A | LOC100525548 | 1899 |
 |  | ASGA0080319 | SSC18 | 49513089 | A | LOC100516656 | 43287 |
CD8+ T% | 1 | ALGA0006170 | SSC1 | 147676962 | B | SELS | 101263 |
CD4+:CD8+ | 5 | H3GA0041012 | SSC14 | 77946383 | A | PSAP | within |
 |  | ALGA0117513 | SSC15 | 123215784 | A | LOC100518938 | 11678 |
 |  | ALGA0122248 | SSC16 | 73417692 | A | LOC100738933 | 403285 |
 |  | ALGA0098112 | SSC18 | 38463920 | A | BMPER | 113622 |
 |  | MARC0089391 | SSC18 | 38488630 | A | BMPER | 88912 |